Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_029065.1 Length=98765 Score E Sequences producing significant alignments: (Bits) Value seq122 114 8e-21 >seq122 Length=4874392 Score = 114 bits (126), Expect = 8e-21 Identities = 162/225 (72%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 86348 CTGTGGGAAACCTTCGGTGGCACTCTCACTGAGACTGGTCACAAACTGCTTGACTCGCAC 86407 |||||||| | |||||| ||||| ||| || | || |||| |||| ||| ||||| Sbjct 3983543 CTGTGGGAGATCTTCGGCGGCACGGTCAATGCCAGGGGCTACAAGGTGCTGGACCCGCAC 3983484 Query 86408 ATCGGCTTGATCTATGGTGACTCGATCACCGCTGCACGGGCCTTAGAGATTCTGAGTCGT 86467 | || ||||||| || |||||||| ||| | || ||| |||| ||||||||| Sbjct 3983483 GTGGGTCTGATCTACGGCGACTCGATTACCCTCGAGCGTGCCAATCAGATCCTGAGTCGT 3983424 Query 86468 CTGGCTGAACAGGGCTACG-CTGCTGCAAACGTTGTGTTTGGTGTGGGTTCTTTCACCTA 86526 |||| | | |||| | | || || || || ||||| || || || |||| || || Sbjct 3983423 CTGGAGGCCAAAGGCTTTGCCAGCAGC-AATGTGGTGTTCGGCGTCGGGTCTTATACGTA 3983365 Query 86527 CCAGTGCAACACCCGTGACACCTTCGGTTTTGCTGTGAAGGCAAC 86571 ||||| |||||| ||||||||||| ||||| || |||| || || Sbjct 3983364 CCAGTACAACACGCGTGACACCTTTGGTTTCGCCATGAAAGCGAC 3983320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 315899085483418