Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_029079.1 Length=75339 Score E Sequences producing significant alignments: (Bits) Value seq122 127 1e-24 >seq122 Length=4874392 Score = 127 bits (140), Expect = 1e-24 Identities = 321/481 (67%), Gaps = 13/481 (3%) Strand=Plus/Minus Query 66249 ATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGAC 66308 ||||| || |||||| |||| ||||| | || |||||| ||| || || ||| |||| Sbjct 3357440 ATCGATGCCGAGCACGCCCTTGACCCGGTCTATGCCAAGAAGCTGGGCGTAGACATCGAT 3357381 Query 66309 AACCTCGTGGTGGT-TCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCT 66367 ||||| | || | ||||||||| || || |||||||| ||||| ||| ||| || Sbjct 3357380 AACCTGCTC-TGTTCTCAGCCGGATACCGGTGAGCAGGCGCTGGAAATCTGTGATGCGCT 3357322 Query 66368 CGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCG 66427 | || || | | | | | || |||||||||| || ||||| ||| ||| Sbjct 3357321 GGCGCGTTCCGGTGCGGTTGACGTGATCATCGTTGACTCCGTTGCGGCGCTGACGCCAAA 3357262 Query 66428 CGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTC 66487 || || | ||||| || ||||| ||| |||| | ||||| || || | ||| Sbjct 3357261 AGCGGAAATTGAAGGTGAAATCGGTGACTCTCACATGGGCCTTGCGGCACGTATGATGAG 3357202 Query 66488 GCAGGCCATGCGCAAGCTCACCGGCACCATCTCCAGCAC--CAACACGCTGACGCTCTGG 66545 ||||| ||||| ||||| |||| | |||| | || || ||| ||| | ||| Sbjct 3357201 CCAGGCGATGCGTAAGCTGGCCGGTA--ATCTGAAAAACTCCAGCACCCTGCTGATCTTC 3357144 Query 66546 GTCAACCAGTTGCGCGAGAAGATCGGCA--ACGTGGGCTACGGCCCGAACGAGACCACCA 66603 |||||||| | || ||| || || | || | || |||| || ||||| | Sbjct 3357143 ATCAACCAGATCCGTATGAAAATTGGTGTGATGTTTGGTAA--CCCG---GAAACCACGA 3357089 Query 66604 CGGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCA 66663 | || || || || ||| |||||||||||| ||||| ||||| |||| || |||| Sbjct 3357088 CCGGTGGTAACGCACTGAAGTTCTACGCCTCTGTCCGTCTGGATATCCGCCGTATCGGTG 3357029 Query 66664 CCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACA 66723 | || ||||| || || | ||||| | | ||||| ||||| || || || |||| Sbjct 3357028 CGATTAAAGAAGGTGACGAAGTGGTCGGTAGCGAAACCCGCGTGAAAGTGGTGAAAAACA 3356969 Query 66724 A 66724 | Sbjct 3356968 A 3356968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 240941607447900