Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_029091.1 Length=168771 Score E Sequences producing significant alignments: (Bits) Value seq122 174 2e-38 seq83 167 3e-36 >seq122 Length=4874392 Score = 174 bits (192), Expect = 2e-38 Identities = 144/176 (82%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 123121 GTCAACATCTGAACGTTAACGTTCTGCGTCGTGAAACTCTAGAAGATGCAGTTAAGCATC 123180 |||| ||||||||||| ||||| ||| | |||||||| || ||||| || || ||||| | Sbjct 3215812 GTCAGCATCTGAACGTCAACGTCCTGAGCCGTGAAACGCTGGAAGAGGCGGTGAAGCACC 3215753 Query 123181 CAGAAAAATATCCGCAGCTGACCATCCGTGTATCTGGTTATGCAGTTCGCTTTAACTCTC 123240 | || |||||||||||||||||||| || || || |||||||| || || ||||||||| Sbjct 3215752 CGGAGAAATATCCGCAGCTGACCATTCGCGTTTCCGGTTATGCCGTGCGTTTTAACTCTT 3215693 Query 123241 TGACTCCGGAACAGCAGCGCGACGTTATCGCTCGCACCTTTACTGAGAGTCTATAA 123296 |||| || ||||||||||| ||||| || | || ||||||||||| || || ||| Sbjct 3215692 TGACGCCAGAACAGCAGCGTGACGTGATTACGCGTACCTTTACTGAAAGCCTTTAA 3215637 Score = 96.9 bits (106), Expect = 4e-15 Identities = 284/429 (66%), Gaps = 8/429 (2%) Strand=Plus/Plus Query 41873 CGTTTTTATGATGCCGTTTCTACTCATCAAG-TTTCATTGCCAACCCCAATTATGGCAGG 41931 ||||| || ||||| | || || | | ||| |||| |||| || ||||||||| | || Sbjct 2805841 CGTTTCTACGATGCGATCTCCAC-CTTTAAGATTTCGCTGCCGACGCCAATTATGTCCGG 2805899 Query 41932 TGCTCGTACTCCGACTCGCCAGTTCTCTAGTTGTGTAGTTATTGAAGCCGGTGATTCGTT 41991 | || || ||||| ||||||||| || ||| | ||||| ||| || | Sbjct 2805900 CGTGCGCACCCCGACGCGCCAGTTCAGCTCCTGCGTACTGATTGAGTGCGGCGACAGCCT 2805959 Query 41992 AAAATCTATTAACAAAACTTC-AGCATCAATTATTGAATATATTTCTAAACGAGCTGGTA 42050 | || |||||| || || ||| | ||| | | || ||||| | || || |||| Sbjct 2805960 TGATTCCATTAACGCCACCTCCAGCG-CGATTGTGAAGTACGTTTCTCAGCGTGCCGGTA 2806018 Query 42051 TCGGTATCAACGTTGGTATGCTTCGTGCAGAAGGTTCTAAGATCGGTATGGGTGAAG--T 42108 |||| || |||| ||| | ||||| || |||| | ||||||| | Sbjct 2806019 TCGGCATTAACGCCGGTCGCATCCGTGCGCTGGGCAGCCCGATCCGCGGCGGTGAAGCAT 2806078 Query 42109 TCGACATACGGGTGTTATTCCATTCTGGAAACATTTCCAAACTGCAGTAAAATCTTGTTC 42168 || ||| ||| || ||||| |||| || || ||||| || || || || || || || Sbjct 2806079 TCCACAC-CGGCTGC-ATTCCGTTCTATAAGCACTTCCAGACCGCGGTGAAGTCCTGCTC 2806136 Query 42169 TCAAGGTGGTATTCGTGGTGGTGCTGCTACAGCGTATTATCCGATGTGGCACTTAGAAGT 42228 ||| || || | || || ||||| || || || || || |||||||| | ||||| Sbjct 2806137 TCAGGGCGGCGTGCGCGGCGGTGCAGCGACCCTGTTCTACCCAATGTGGCATCTGGAAGT 2806196 Query 42229 AGAGAACCTATTAGTTCTGAAAAATAACAAAGGCGTGGATGAAAACCGTATTCGACATAT 42288 || | ||| | || ||||| || ||| ||||| || | ||||| | || ||||| Sbjct 2806197 GGAAAGCCTGCTGGTGCTGAAGAACAACCGCGGCGTTGAAGGCAACCGCGTGCGTCATAT 2806256 Query 42289 GGACTACGG 42297 ||||||||| Sbjct 2806257 GGACTACGG 2806265 Score = 89.7 bits (98), Expect = 6e-13 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 123121 GTCAACATCTGAACGTTAACGTTCTGCGTCGTGAAACTCTAGAAGATGCAGTTAAGCATC 123180 |||| || || ||||| ||||| || ||||||| || || || | | | | Sbjct 1181483 GTCAGCACCTCAACGTCAACGTGATGAACCGTGAAATGCTGCTGGAAGCGATGGAAGACC 1181424 Query 123181 CAGAAAAATATCCGCAGCTGACCATCCGTGTATCTGGTTATGCAGTTCGCTTTAACTCTC 123240 | ||||||||||||||| | ||||| || || || || ||||| || || || ||||| | Sbjct 1181423 CGGAAAAATATCCGCAGTTAACCATTCGCGTGTCGGGCTATGCGGTACGTTTCAACTCGC 1181364 Query 123241 TGACTCCGGAACAGCAGCGCGACGTTATCGCTCGCACCTTTACTGAGAG 123289 ||||| |||||||||| || || ||| | || ||||| ||| |||| Sbjct 1181363 TGACTAAAGAACAGCAGCAGGATGTGATCACCCGTACCTTCACTCAGAG 1181315 >seq83 Length=912621 Score = 167 bits (184), Expect = 3e-36 Identities = 318/467 (68%), Gaps = 1/467 (0%) Strand=Plus/Plus Query 41872 TCGTTTTTATGATGCCGTTTCTACTCATCAAGTTTCATTGCCAACCCCAATTATGGCAGG 41931 ||| |||||||||||||| || || | || |||| || || || ||||| ||||| || Sbjct 579742 TCGCTTTTATGATGCCGTGTCGACCTTTAAAATTTCCTTACCTACGCCAATCATGGCTGG 579801 Query 41932 TGCTCGTACTCCGACTCGCCAGTTCTCTAGTTGTGTAGTTATTGAAGCCGGTGATTCGTT 41991 | || || ||||||||||| ||| || || |||| || || ||| || Sbjct 579802 GGTACGGACGCCGACTCGCCAATTCAGCTCATGCGTGCTTATCGAGTGTGGCGATAGCTT 579861 Query 41992 AAAATCTATTAACAAAACTTCAGCATCAATTATTGAATATATTTCTAAACGAGCTGGTAT 42051 | | ||||| ||| ||||| | || || |||| |||| |||| || || || Sbjct 579862 AGACTCTATCAACGCCACTTCTAGTGCTATCGTTAAATACGTTTCACAACGCGCAGGGAT 579921 Query 42052 CGGTATCAACGTTGGTATGCTTCGTGCAGAAGGTTCTAAGATCGGTATGGGTGAAGTTCG 42111 ||||||||| | ||| ||||||| ||| ||| || ||||||| | Sbjct 579922 CGGTATCAATGCTGGCCGTATTCGTGCGCTAGGCAGCCCAATCCGTGGTGGTGAAGCTTT 579981 Query 42112 ACATACGGGTGTTATTCCATTCTGGAAACATTTCCAAACTGCAGTAAAATCTTGTTCTCA 42171 ||||| ||| ||| || |||| ||||| ||||| || || || |||||||| || || Sbjct 579982 CCATACCGGTTGTATCCCGTTCTACAAACACTTCCAGACGGCCGTGAAATCTTGCTCGCA 580041 Query 42172 AGGTGGTATTCGTGGTGGTGCTGCTACAGCGTATTATCCGATGTGGCACTTAGAAGTAGA 42231 ||| || | || || ||||| || ||| || ||| || ||||||||||| ||| | || Sbjct 580042 AGGCGGCGTACGCGGGGGTGCCGCGACACTGTTTTACCCTATGTGGCACTTGGAAATTGA 580101 Query 42232 GAACCTATTAGTTCTGAAAAATAACAAAGGCGTGGATGAAAACCGTATTCGACATATGGA 42291 | | ||||||| |||||||||||| || || || | |||||| | || || | || Sbjct 580102 AAGCTTATTAGTCCTGAAAAATAACCGTGGTGTTGAAGGTAACCGTGTCCGTCACCTAGA 580161 Query 42292 CTACGGAATTCAGATTAATGACCTTATGATGGAACGCCTTGGTAAAA 42338 ||||| | || || || | || ||| |||| | |||||||| Sbjct 580162 TTACGGCGTACAAATCAACAAACTCATGTATCAACGTC-TGGTAAAA 580207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 539896929509880