Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq4 111 1e-19 seq122 86.0 6e-12 >seq4 Length=4567600 Score = 111 bits (122), Expect = 1e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 34523 CCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGGCG 34582 |||||||||||||| || | ||||| || ||||| || || |||| ||||| Sbjct 988943 CCTGATGACAGAAGAATTCTCATGTGTGCATGGAATCCTGTTGACGTCCCAAAAATGGCT 989002 Query 34583 CTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAG 34642 | || || ||||| ||| ||||| || || || ||||| || ||||| || || Sbjct 989003 TTACCGCCTTGCCATTGCCTTGTGCAATTTTATGTGGCAAATGGTGAACTGTCTTGTCAA 989062 Query 34643 CTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCT 34702 ||||||||| | || | ||| ||||| | || || || || |||||||| || || ||| Sbjct 989063 CTCTATCAAAGGTCAGCAGATATGGGACTGGGTGTCCCATTTAACATTGCCAGCTATGCT 989122 Query 34703 CTGCTCACGTACATGATCGCTCATGT 34728 || || || || ||||| |||||||| Sbjct 989123 CTCCTTACTTATATGATAGCTCATGT 989148 Score = 111 bits (122), Expect = 1e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 6617 ACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAAC 6676 |||||||| ||||| || || || ||||| || || |||||||| || || || || | Sbjct 989148 ACATGAGCTATCATATAAGTAAGGAGAGCATAGCTGGCAATGTTAAATGGGACACCCAGT 989089 Query 6677 CCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAAT 6736 ||||| ||| | || | ||||||||| || || ||||| || ||||| || || || ||| Sbjct 989088 CCCATATCTGCTGACCTTTGATAGAGTTGACAAGACAGTTCACCATTTGCCACATAAAAT 989029 Query 6737 TGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCG 6796 || ||| ||||| || || | ||||| |||| || || ||||| || Sbjct 989028 TGCACAAGGCAATGGCAAGGCGGTAAAGCCATTTTTGGGACGTCAACAGGATTCCATGCA 988969 Query 6797 CACATCACGATCCTTCTGTCATCAGG 6822 ||||| | || |||||||||||||| Sbjct 988968 CACATGAGAATTCTTCTGTCATCAGG 988943 >seq122 Length=4874392 Score = 86.0 bits (94), Expect = 6e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || || ||||| | | |||| |||||| || || || |||||||||| || | Sbjct 3442274 TGGGCCATCATATGCACCAGCAAAGCGTAGCTGGCGATATTGAACGGCAGGCCGAGGAAG 3442333 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 || || | || || ||||| || |||||||| |||| || | ||| |||||||| ||| Sbjct 3442334 ATATCGCAGGAGCGCTGATACAGTTGGCAGGAGAGCTTGCCGTCCGCAACGTAGAACTGG 3442393 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATC 6769 ||| | ||||||||||| ||||||||| Sbjct 3442394 AAGAACGCGTGGCACGGGGCCAGCGCCATC 3442423 Score = 86.0 bits (94), Expect = 6e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 34576 GATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTC 34635 ||||||||| ||||||||||| | ||| ||| |||||||| ||| | || |||| || Sbjct 3442423 GATGGCGCTGGCCCCGTGCCACGCGTTCTTCCAGTTCTACGTTGCGGACGGCAAGCTCTC 3442364 Query 34636 CTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAG 34695 |||||| || ||||| || || | || || | || |||||||||| || || || Sbjct 3442363 CTGCCAACTGTATCAGCGCTCCTGCGATATCTTCCTCGGCCTGCCGTTCAATATCGCCAG 3442304 Query 34696 TTACGCTCTGCTCACGTACATGATCGCTCA 34725 |||||| |||| | | ||||| || || Sbjct 3442303 CTACGCTTTGCTGGTGCATATGATGGCCCA 3442274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448227306657360