Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq3962 147 5e-30 seq43 138 3e-27 seq19 136 9e-27 seq275 129 1e-24 seq69 86.0 1e-11 >seq3962 Length=6517 Score = 147 bits (162), Expect = 5e-30 Identities = 147/191 (77%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 210925 CTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGA 210984 |||| || |||||||| || | ||||| | ||||| || ||||||||||| || |||| Sbjct 6288 CTTTCTGAATGTTATAGTCAGAGAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGA 6229 Query 210985 TAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTT 211044 | || || || ||||| || |||| || |||||||||||||| || ||||| || | Sbjct 6228 TCAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATTTTGGCCTTCACATTCT 6169 Query 211045 CGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAA 211104 | || | ||||||| |||||||| || ||||| ||||| || || |||||||| |||| Sbjct 6168 CAATTGAGTCAGAGGGCTCAACCTCTAGTGTGATGGTCTTGCCGGTAAGAGTCTTGACAA 6109 Query 211105 ACACCTGCATT 211115 | | ||||||| Sbjct 6108 AAATCTGCATT 6098 Score = 140 bits (154), Expect = 8e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || || ||||| ||||| |||||||| || || | | ||| | || || Sbjct 398 AGAACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAAGGTGCGGCCGTCC 339 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || |||||||| |||||||| || || || || || || || | || || |||||| Sbjct 338 TCGAGTTGCTTGCCGGCGAAGATCAGTCGCTGCTGATCTGGGGGGATGCCCTCTTTGTCC 279 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||||| || ||| |||||||| |||||||| ||| Sbjct 278 TGGATCTTAGCCTTGACGTTCTCGATGGAATCCGAGGGCTCAACCTCCAGAGTGATGGTC 219 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| || || | |||||| Sbjct 218 TTGCCTGTAAGGGTCTTGACGAAAATCTGCAT 187 Score = 104 bits (114), Expect = 5e-17 Identities = 125/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || || || || ||||| |||||||| || || | | ||| | ||||| Sbjct 170 AGAACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCAGACAAGGTGCGGCCATCC 111 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || |||||||| |||||||| || | || || || || || | || ||||||||| Sbjct 110 TCAAGTTGCTTGCCGGCGAAGATCAGTCTCTGCTGATCTGGGGGGATGCCCTCCTTGTCC 51 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||||| ||||| || || |||| ||| ||| |||||||| || Sbjct 50 TGGATCTTAGCCTTCACATTCTCAATGGAGTCTGAGGGCTCAACCTCCAG 1 Score = 93.3 bits (102), Expect = 1e-13 Identities = 122/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 210925 CTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGA 210984 ||||||||||||| || || | | ||| | ||||| || || |||||||| ||||| | Sbjct 5981 CTTTTTGGATGTTGTAGTCTGACAAGGTGCGGCCATCCTCAAGTTGCTTGCCAGCGAAAA 5922 Query 210985 TAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTT 211044 | | | || || || || |||| || |||||||| |||||||| || || || | Sbjct 5921 TCAATCTCTGCTGATCTGGGGGAATACCCTCCTTGTCTTGGATCTTGGCCTTAACATTCT 5862 Query 211045 CGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAG 211093 |||| | || ||| |||||||| || ||||| ||||| || || || Sbjct 5861 CGATAGAATCTGAGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTAAG 5813 >seq43 Length=2082672 Score = 138 bits (152), Expect = 3e-27 Identities = 157/211 (74%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 210905 GACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTC 210964 |||||| || | ||||||||| || ||||| || || || | | ||| | |||||||| Sbjct 901283 GACAAGATGTAAAGTGGACTCCTTCTGGATATTGTAGTCAGACAAGGTGCGACCATCTTC 901224 Query 210965 CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTG 211024 ||||||||||| || ||||| | || || || || || || | ||||| ||||| || Sbjct 901223 AAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGATCTGGGGGGATGCCTTCTTTGTCTTG 901164 Query 211025 GATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTT 211084 ||| || || ||||| || || | |||||| |||||| || ||||| || ||||| Sbjct 901163 GATTTTGGCCTTTACGTTCTCAATAGAATCAGAGGGTTCAACTTCCAGAGTAATGGTCTT 901104 Query 211085 TCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || ||||| ||||| ||||| | ||||||| Sbjct 901103 GCCAGTGAGTGTCTTGACAAAGATCTGCATT 901073 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||| || || ||||| || || || || || || || | | || | |||||| Sbjct 901057 AGGACAAGATGGAGGGTGGATTCCTTCTGAATATTGTAGTCAGACAAAGTACGGCCATCT 900998 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || || ||||| | | || ||||| || || | || || || ||| Sbjct 900997 TCAAGCTGCTTACCGGCAAAGATCAATCTCTGCTGGTCTGGGGGGATGCCCTCTTTATCC 900938 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||||| || ||| |||||||| |||||||| ||| Sbjct 900937 TGGATCTTAGCCTTGACGTTCTCGATGGAATCCGAGGGCTCAACCTCCAGAGTGATGGTC 900878 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| || || | |||||| Sbjct 900877 TTGCCTGTCAGGGTCTTCACGAAGATCTGCAT 900846 >seq19 Length=2947477 Score = 136 bits (150), Expect = 9e-27 Identities = 146/193 (76%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 210925 CTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGA 210984 |||| || || || || || | | ||||| |||||||| ||||||||||| ||||||| Sbjct 340559 CTTTCTGAATATTGTAGTCAGACAATGTCCTGCCATCTTCAAGCTGCTTGCCAGCGAAGA 340618 Query 210985 TAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTT 211044 | || || || ||||| || || | |||||||||||||| ||||| ||||| || | Sbjct 340619 TGAGACGCTGCTGGTCTGGGGGGATACCTTCCTTGTCCTGAATCTTAGCCTTCACATTCT 340678 Query 211045 CGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAA 211104 | |||| || ||| || ||||| |||||||| ||||| ||||| || ||||| || | Sbjct 340679 CAATGGAATCTGAGGGCTCGACCTCAAGAGTGATGGTCTTGCCCGTAAGGGTCTTGACGA 340738 Query 211105 ACACCTGCATTTT 211117 | | |||||| || Sbjct 340739 AGATCTGCATGTT 340751 >seq275 Length=398669 Score = 129 bits (142), Expect = 1e-24 Identities = 145/194 (75%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 210925 CTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGA 210984 ||||||| ||||| || || | || || | ||||| || |||||||| || || || | Sbjct 170725 CTTTTTGAATGTTGTAGTCTGACAGTGTGCGCCCATCCTCAAGCTGCTTTCCAGCAAAAA 170666 Query 210985 TAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTT 211044 |||| || || ||||| || || | ||||||||||||||| || || ||| ||||| | Sbjct 170665 TAAGACGCTGCTGGTCTGGGGGGATTCCTTCCTTGTCCTGAATTTTGGCTTTGACGTTCT 170606 Query 211045 CGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAA 211104 | || | ||| ||| ||||||||| | ||||| || || || ||||| || || |||| Sbjct 170605 CAATAGAGTCTGAGGGTTCAACCTCTAAGGTGATAGTTTTCCCAGTGAGGGTTTTCACAA 170546 Query 211105 ACACCTGCATTTTA 211118 | | ||||||| || Sbjct 170545 AGATCTGCATTGTA 170532 >seq69 Length=1756628 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 210895 GAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCC 210954 ||||||||||| |||||||||||| || || || || |||| ||| || |||||| Sbjct 279226 GAAGTCTTAGGGTAAGGTGAAGAGTCGATTCCTTCTGAATGTCATAGTCTAGAAGGGTTT 279285 Query 210955 TTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCA 211001 ||||||||||| ||| ||||| |||||||| | | || |||||| Sbjct 279286 GTCCATCTTCCAACTGTTTGCCAGCGAAGATCAACCTCTGCTGGTCA 279332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159058984209995