Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq43 127 1e-24 seq3962 104 2e-17 seq275 102 6e-17 >seq43 Length=2082672 Score = 127 bits (140), Expect = 1e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || || || ||||| || || || || ||||| |||||||| || | Sbjct 901073 AATGCAGATCTTTGTCAAGACACTCACTGGCAAGACCATTACTCTGGAAGTTGAACCCTC 901132 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| | |||| ||||| ||||||||||| | || |||||||| Sbjct 901133 TGATTCTATTGAGAACGTAAAGGCCAAAATCCAAGACAAAGAAGGCATCCCCCCAGATCA 901192 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||||| || ||||| ||||| || || ||||| | ||||| || || ||||| Sbjct 901193 GCAGCGTTTGATCTTTGCTGGCAAGCAGCTTGAAGATGGTCGCACCTTGTCTGACTACAA 901252 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || |||||||| |||||| | || || | ||||| || || Sbjct 901253 TATCCAGAAGGAGTCCACTTTACATCTTGTCTTGCGTTTGCGCGGTGG 901300 >seq3962 Length=6517 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || ||||| || || || || |||||||| || ||||| || || Sbjct 187 ATGCAGATTTTCGTCAAGACCCTTACAGGCAAGACCATCACTCTGGAGGTTGAGCCCTCG 246 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || | | || | | || || || |||||||| || | || |||||||| Sbjct 247 GATTCCATCGAGAACGTCAAGGCTAAGATCCAGGACAAAGAGGGCATCCCCCCAGATCAG 306 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || |||||||| ||||| || |||| ||||| || || |||||| Sbjct 307 CAGCGACTGATCTTCGCCGGCAAGCAACTCGAGGACGGCCGCACCTTGTCTGACTACAAC 366 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || || ||||| ||||| | ||| | ||| Sbjct 367 ATCCAGAAAGAATCCACCCTCCATCTTGTT 396 >seq275 Length=398669 Score = 102 bits (112), Expect = 6e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 23607 TAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTC 23666 || ||||||||| || || ||||||||||| || ||||| ||||| | || ||||| | Sbjct 170532 TACAATGCAGATCTTTGTGAAAACCCTCACTGGGAAAACTATCACCTTAGAGGTTGAACC 170591 Query 23667 CACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | | ||| || |||| | | ||| |||||| ||||| ||||| | || ||||| Sbjct 170592 CTCAGACTCTATTGAGAACGTCAAAGCCAAAATTCAGGACAAGGAAGGAATCCCCCCAGA 170651 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || |||||| | || ||||| || || || || || || | ||||| | || || Sbjct 170652 CCAGCAGCGTCTTATTTTTGCTGGAAAGCAGCTTGAGGATGGGCGCACACTGTCAGACTA 170711 Query 23787 CAACATACAAAAAG 23800 |||||| ||||||| Sbjct 170712 CAACATTCAAAAAG 170725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337983799621604