Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq19 136 9e-27 seq705 118 3e-21 seq3962 116 9e-21 seq122 107 5e-18 seq43 107 5e-18 seq275 105 2e-17 >seq19 Length=2947477 Score = 136 bits (150), Expect = 9e-27 Identities = 146/193 (76%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 225524 CTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGA 225583 |||| || | |||||| || | ||| || || |||||||| |||||||| |||||||||| Sbjct 340559 CTTTCTGAATATTGTAGTCAGACAATGTCCTGCCATCTTCAAGCTGCTTGCCAGCGAAGA 340618 Query 225584 TAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTT 225643 | || || || ||||| || || |||||||||||||| || ||||| ||||||| | Sbjct 340619 TGAGACGCTGCTGGTCTGGGGGGATACCTTCCTTGTCCTGAATCTTAGCCTTCACATTCT 340678 Query 225644 CGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGA 225703 | |||| ||||||| || || || | ||||| ||||||||||| | || || | || Sbjct 340679 CAATGGAATCTGAGGGCTCGACCTCAAGAGTGATGGTCTTGCCCGTAAGGGTCTTGACGA 340738 Query 225704 ACACTTGCATTTT 225716 | | ||||| || Sbjct 340739 AGATCTGCATGTT 340751 >seq705 Length=31904 Score = 118 bits (130), Expect = 3e-21 Identities = 205/294 (70%), Gaps = 7/294 (2%) Strand=Plus/Minus Query 7440 AACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGAT 7499 ||| ||||||||||| ||| ||||| || | |||||||| ||||||| | | Sbjct 13475 AACATTATATTTAATGTTTTCATTATTTTCAGGATTAATAGGTACAGCATTTTCTGTATT 13416 Query 7500 TATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAA-ATAT-TGAGTGGTAATAGCCAACTT 7557 ||||| ||||||||| | | || ||| ||| |||| | || |||| ||| | Sbjct 13415 AATAAGATTAGAATTATCAGGACCAGGTGTACAATATATATCAGA--TAAT---CAATTA 13361 Query 7558 TACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTT 7617 || || ||| || || || || || || | |||||||||||| | |||||||| | | Sbjct 13360 TATAATAGTATAATAACAGCACACGCTATTATGATGATTTTCTTTATGGTTATGCCAGCT 13301 Query 7618 ATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCT 7677 | ||||| ||||| || |||| || | || ||| | | || | ||| |||||||| Sbjct 13300 TTAATAGGTGGTTTTGGTAATTTCTTATTACCATTATTAGTAGGAGGTCCAGATATGGCA 13241 Query 7678 TTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATTTCTA 7731 || ||||| | || ||||||||||| |||||| || ||| |||||| || Sbjct 13240 TTCCCAAGATTAAATAATATAAGTTTCTGATTATTAGTGCCAAGTTTATTTTTA 13187 >seq3962 Length=6517 Score = 116 bits (128), Expect = 9e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || ||||| ||||| ||||||||||| |||| ||||| || | ||| || | || || Sbjct 398 AGAACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAAGGTGCGGCCGTCC 339 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || ||||| || |||||||| ||||| || || || || || || || || ||||| Sbjct 338 TCGAGTTGCTTGCCGGCGAAGATCAGTCGCTGCTGATCTGGGGGGATGCCCTCTTTGTCC 279 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||||||| || |||| || || || | ||||| ||| Sbjct 278 TGGATCTTAGCCTTGACGTTCTCGATGGAATCCGAGGGCTCAACCTCCAGAGTGATGGTC 219 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || | || || | ||| | ||||| Sbjct 218 TTGCCTGTAAGGGTCTTGACGAAAATCTGCAT 187 Score = 111 bits (122), Expect = 4e-19 Identities = 124/166 (75%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 225524 CTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGA 225583 ||||||||| ||||| || | ||| || | ||||| || || ||||| |||||||| | Sbjct 5981 CTTTTTGGATGTTGTAGTCTGACAAGGTGCGGCCATCCTCAAGTTGCTTGCCAGCGAAAA 5922 Query 225584 TAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTT 225643 | | || || || || || |||||||| ||||||||||||||||| ||| ||| | Sbjct 5921 TCAATCTCTGCTGATCTGGGGGAATACCCTCCTTGTCTTGGATCTTGGCCTTAACATTCT 5862 Query 225644 CGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 |||| | ||||||| || || || | ||||| |||||||| || Sbjct 5861 CGATAGAATCTGAGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGT 5816 >seq122 Length=4874392 Score = 107 bits (118), Expect = 5e-18 Identities = 100/126 (79%), Gaps = 1/126 (1%) Strand=Plus/Minus Query 7737 GGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTTC 7796 |||||| ||||| ||||| ||| ||||||||||||| ||||||||||| | | | | Sbjct 4451502 GGTAAGGTTCTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCCC 4451443 Query 7797 CGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATA-TTTACGCG 7855 ||||| || |||||||||||||||||||| |||| | | |||| || | || ||||| Sbjct 4451442 CGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGTCGACTTAACGCG 4451383 Query 7856 TTAGCT 7861 |||||| Sbjct 4451382 TTAGCT 4451377 Score = 107 bits (118), Expect = 5e-18 Identities = 100/126 (79%), Gaps = 1/126 (1%) Strand=Plus/Minus Query 7737 GGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTTC 7796 |||||| ||||| ||||| ||| ||||||||||||| ||||||||||| | | | | Sbjct 4583116 GGTAAGGTTCTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCCC 4583057 Query 7797 CGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATA-TTTACGCG 7855 ||||| || |||||||||||||||||||| |||| | | |||| || | || ||||| Sbjct 4583056 CGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGTCGACTTAACGCG 4582997 Query 7856 TTAGCT 7861 |||||| Sbjct 4582996 TTAGCT 4582991 Score = 107 bits (118), Expect = 5e-18 Identities = 100/126 (79%), Gaps = 1/126 (1%) Strand=Plus/Minus Query 7737 GGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTTC 7796 |||||| ||||| ||||| ||| ||||||||||||| ||||||||||| | | | | Sbjct 4738620 GGTAAGGTTCTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCCC 4738561 Query 7797 CGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATA-TTTACGCG 7855 ||||| || |||||||||||||||||||| |||| | | |||| || | || ||||| Sbjct 4738560 CGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGTCGACTTAACGCG 4738501 Query 7856 TTAGCT 7861 |||||| Sbjct 4738500 TTAGCT 4738495 >seq43 Length=2082672 Score = 107 bits (118), Expect = 5e-18 Identities = 137/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 || |||||| || | |||||| || || |||| |||||| || | ||| || | ||||| Sbjct 901286 CAAGACAAGATGTAAAGTGGACTCCTTCTGGATATTGTAGTCAGACAAGGTGCGACCATC 901227 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| ||||| ||||| | || || || || || || || ||||| ||||| Sbjct 901226 TTCAAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGATCTGGGGGGATGCCTTCTTTGTC 901167 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||| || ||| || || || | || |||| ||| || || | || || || Sbjct 901166 TTGGATTTTGGCCTTTACGTTCTCAATAGAATCAGAGGGTTCAACTTCCAGAGTAATGGT 901107 Query 225681 CTTGCCCGT 225689 |||||| || Sbjct 901106 CTTGCCAGT 901098 >seq275 Length=398669 Score = 105 bits (116), Expect = 2e-17 Identities = 142/195 (73%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 225524 CTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGA 225583 ||||||| | ||||| || | || || | |||||| || |||||||| ||||| || | Sbjct 170725 CTTTTTGAATGTTGTAGTCTGACAGTGTGCGCCCATCCTCAAGCTGCTTTCCAGCAAAAA 170666 Query 225584 TAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC-TTCACAGCT 225642 |||| || || ||||| || || || ||||||||||| || || ||| || || || Sbjct 170665 TAAGACGCTGCTGGTCTGGGGGGATTCCTTCCTTGTCCTGAAT-TTTGGCTTTGACGTTC 170607 Query 225643 TCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATG 225702 || || | |||||||| ||| || ||||| ||||| || || || || | ||||| | Sbjct 170606 TCAATAGAGTCTGAGGGTTCAACCTCTAAGGTGATAGTTTTCCCAGTGAGGGTTTTCACA 170547 Query 225703 AACACTTGCATTTTA 225717 || | |||||| || Sbjct 170546 AAGATCTGCATTGTA 170532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192435505706522