Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_030917.1 Length=93577 Score E Sequences producing significant alignments: (Bits) Value seq122 486 1e-132 >seq122 Length=4874392 Score = 486 bits (538), Expect = 1e-132 Identities = 673/937 (72%), Gaps = 4/937 (0%) Strand=Plus/Plus Query 78221 GCCATCAACTGGAACAAGGTCACCGACGAGGTCGACGACACCGTGTGGGATCGACTCACC 78280 ||||||||||||||||| || |||||| || |||||| | || || ||| Sbjct 3304325 GCCATCAACTGGAACAACATCGAAGACGAGAAAGATCTGGAAGTGTGGAACCGCCTGACC 3304384 Query 78281 GGCAACTTCTGGTTGCCCGAGAAGGTACCGGTGTCCAACGACATCCCATCCTGGGACACC 78340 ||||||||||| |||| || ||||||||| |||| ||||| || || | ||| || || Sbjct 3304385 AGCAACTTCTGGCTGCCGGAAAAGGTACCGCTGTCTAACGATATTCCGGCGTGGAACTCC 3304444 Query 78341 CTTACGCCGGAAGAGAAGGAACTCACTATGCGTGTGTTCACCGGCCTCACCCTGCTCGAC 78400 || | | || ||| | | || || || || |||||||||||||| || |||||||| Sbjct 3304445 CTGAATGCCGATGAGCAACAGCTGACCATCCGCGTGTTCACCGGCCTGACGCTGCTCGAT 3304504 Query 78401 ACCATCCAGGGCACAGTTGGCGCCATCTCGCTCATCGCCGACGCCAACACCCCGCACGAG 78460 ||||||||| ||| | ||||| |||| || ||||| || || ||||| || Sbjct 3304505 ACCATCCAGAACACCCTCGGCGCTCCGGCGCTGATGGCCGATGCGCTGACGCCGCATGAA 3304564 Query 78461 GAGGCGGTGCTCACCAACATCGCGTTCATGGAGTCGGTACACGCCAAGTCCTACAGCTCG 78520 ||||| ||| | | |||||| || ||||| |||| || ||| || ||||||||| Sbjct 3304565 GAGGCCGTGATGTCGAACATCAGCTTTATGGAAGCGGTGCATGCCCGCTCATACAGCTCG 3304624 Query 78521 ATCTTCTCAACGCTATGCTCCTCCAAGCAGATTGACGAGGCGTTCCGTTGGTCGGAGGAG 78580 |||||||| ||||| ||| | ||| | |||| | || | | ||| || ||| Sbjct 3304625 ATCTTCTCCACGCTGTGCCACACCAGCGATGTTGATGCCGCCTACGCCTGGAGCGAAGAG 3304684 Query 78581 AACGAGTACCTGCAGCGCAAGGCCCAGATCGTCCTGGACTACTACCGCGGCGACGACCCC 78640 || ||||||||||||||| ||||| | ||| | ||||| || ||||||| Sbjct 3304685 AATCCCCCGCTGCAGCGCAAGGCCGAGATCATTCTGCAGCACTACTACGAGAACGACCCG 3304744 Query 78641 TTGAAGCGGAAGGTGGCCAGTACGCTCCTGGAGGGCTTCCTCTTCTACTCGGGCTTCTAC 78700 | ||| |||| | ||||| | |||| || ||||| |||||||| ||||||||| Sbjct 3304745 CTAAAGAAGAAGATCGCCAGCGTGTTCCTCGAATCGTTCCTGTTCTACTCCGGCTTCTAC 3304804 Query 78701 CTGCCGATGTACTGGTCGAGCCGCGCCAAGCTGACGAACACCGCGGACGTGATCCGGTTG 78760 ||||||||||||||||||||||||| ||||||||| |||||||| || ||||||| || Sbjct 3304805 CTGCCGATGTACTGGTCGAGCCGCGGCAAGCTGACTAACACCGCCGATCTGATCCGTCTG 3304864 Query 78761 ATTATCCGAGACGAAGCAGTTCATGGGTACTACATCGGATACAAGTACCAGCGAGGCCTC 78820 |||||| ||| || || ||||| || ||||||||||| |||||||| ||| || ||| Sbjct 3304865 ATTATCAAAGATGAGGCGGTTCACGGTTACTACATCGGCTACAAGTATCAGAAAGCCCTG 3304924 Query 78821 GAGACCCAGGGGCCGGCGCGGCAGGCTGAGCTCAAGGAGTACACGTTCGATCTGCTCTCG 78880 || | || |||| ||| | | ||||| | ||| | | | || ||||| | Sbjct 3304925 GAAAAAGAGACGCCGCAGCGTAAAGAGGAGCTGCAACAGTTCGCCGTTGAACTGCTGCTG 3304984 Query 78881 GAGCTCTACGACAACGAGTGTGACTACACCGAGCAGCTCTATGACGACGTCGGACTCAC- 78939 | ||| || || || || ||| || ||||| ||| || | | |||||| || | Sbjct 3304985 GCGCTGTATGAAAATGAAATTGAATATACCGATGCGCTGTACGCAGGCGTCGG-CTGGCA 3305043 Query 78940 CGAGGATGTCAAGAAGTTCCTGCGCTACAACGGCAACAAGGCGCTGATGAACCTCGGCTA 78999 || || || || |||||| ||| ||||| | |||||||||||||||||||||||||| Sbjct 3305044 GGAAGAGGTGAAAAAGTTCTTGCATTACAATGCTAACAAGGCGCTGATGAACCTCGGCTA 3305103 Query 79000 CGAAGCACTGTTCCCCAAGGAAGAGACC-ATGGCAGACCCGGCCATCATGTCCGCGCTCT 79058 ||| || ||||||||| || |||| ||| | ||||||| ||| | || ||||| | Sbjct 3305104 CGAGGCGCTGTTCCCCTCTGAGATGACCGATGTTA-ACCCGGCTATCCTCTCGGCGCTGT 3305162 Query 79059 CACCAGGCGGCGACGAGAACCACGACTTCTTCTCCGGGTCGGGCTCGAGCTACGTCATCG 79118 | ||| || ||| || |||||||||||||||||||| || ||||| ||| || || | Sbjct 3305163 CGCCAAACGCCGATGAAAACCACGACTTCTTCTCCGGCTCCGGCTCCTCCTATGTGATGG 3305222 Query 79119 GCAAAGCTGAAGCCACGGCAGATGAGGACTGGGACTT 79155 | ||||| | | || | |||||| |||||| |||| Sbjct 3305223 GTAAAGCGGTCGATACCGAAGATGAAGACTGGAACTT 3305259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 299298752688734