Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_030953.1 Length=170650 Score E Sequences producing significant alignments: (Bits) Value seq122 183 3e-41 seq83 123 3e-23 >seq122 Length=4874392 Score = 183 bits (202), Expect = 3e-41 Identities = 146/176 (83%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 9568 CTCTCGGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAG 9627 || || ||||||||||| | || ||||| ||||||||||| || |||| ||||||||| Sbjct 3215644 CTTTCAGTAAAGGTACGCGTAATCACGTCACGCTGCTGTTCTGGCGTCAAAGAGTTAAAA 3215703 Query 9628 CGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACT 9687 || || ||||||||||| || || |||||||||||||||||||| ||||| ||||| || Sbjct 3215704 CGCACGGCATAACCGGAAACGCGAATGGTCAGCTGCGGATATTTCTCCGGGTGCTTCACC 3215763 Query 9688 GCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTC 9743 || |||||||| |||||||| | ||| ||||| |||||||| || ||||| || || Sbjct 3215764 GCCTCTTCCAGCGTTTCACGGCTCAGGACGTTGACGTTCAGATGCTGACCGCCCTC 3215819 Score = 116 bits (128), Expect = 4e-21 Identities = 136/184 (74%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 9561 TTACAAACTCTCGGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGA 9620 ||||| |||| || |||||||| | ||| || || |||||||||| |||||| || Sbjct 1181308 TTACATGCTCTGAGTGAAGGTACGGGTGATCACATCCTGCTGCTGTTCTTTAGTCAGCGA 1181367 Query 9621 GTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATG 9680 ||| || || || ||||| || || || || ||||| | |||||||||||||||||| | Sbjct 1181368 GTTGAAACGTACCGCATAGCCCGACACGCGAATGGTTAACTGCGGATATTTTTCCGGGTC 1181427 Query 9681 CTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACC 9740 | | || || ||| ||||||| || ||||| ||||| ||||| ||||| || Sbjct 1181428 TTCCATCGCTTCCAGCAGCATTTCACGGTTCATCACGTTGACGTTGAGGTGCTGACCCCC 1181487 Query 9741 TTCA 9744 |||| Sbjct 1181488 TTCA 1181491 Score = 95.1 bits (104), Expect = 1e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 88502 TTCAGTTGAACGCCATAATCCATATGACGAATGCGGTTTTCTTCTACGCCTTTGTTATTT 88561 ||||| || ||||| || ||||||||||| | |||||| |||| ||||| ||| || Sbjct 2806277 TTCAGCTGCACGCCGTAGTCCATATGACGCACGCGGTTGCCTTCAACGCCGCGGTTGTTC 2806218 Query 88562 TTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCG 88621 |||| || || || |||| ||||||| |||||| || || || | || || || Sbjct 2806217 TTCAGCACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAACAGGGTCGCTGCA 2806158 Query 88622 CCGCCACGAATTCCACCCTGTGAACATGATTTAACTGCAGTCTGAAAATGTTTCCAAAAA 88681 ||||| || | || ||||| || || || || || || ||||| || || || | || Sbjct 2806157 CCGCCGCGCACGCCGCCCTGAGAGCAGGACTTCACCGCGGTCTGGAAGTGCTTATAGAAC 2806098 Query 88682 GGAAT 88686 ||||| Sbjct 2806097 GGAAT 2806093 >seq83 Length=912621 Score = 123 bits (136), Expect = 3e-23 Identities = 287/433 (66%), Gaps = 0/433 (0%) Strand=Plus/Minus Query 88507 TTGAACGCCATAATCCATATGACGAATGCGGTTTTCTTCTACGCCTTTGTTATTTTTCAA 88566 ||| ||||| ||||| | ||||| | ||||| |||| || || ||||||||||| Sbjct 580174 TTGTACGCCGTAATCTAGGTGACGGACACGGTTACCTTCAACACCACGGTTATTTTTCAG 580115 Query 88567 AACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCC 88626 || | | |||||| |||||| ||||| ||||| ||| | || || || || || Sbjct 580114 GACTAATAAGCTTTCAATTTCCAAGTGCCACATAGGGTAAAACAGTGTCGCGGCACCCCC 580055 Query 88627 ACGAATTCCACCCTGTGAACATGATTTAACTGCAGTCTGAAAATGTTTCCAAAAAGGAAT 88686 || | || || || || || ||||| || || ||||| || ||||| | || || || Sbjct 580054 GCGTACGCCGCCTTGCGAGCAAGATTTCACGGCCGTCTGGAAGTGTTTGTAGAACGGGAT 579995 Query 88687 AACACCAGTATGACGTACTTCACCCATGCCAATCTTAGAACCTTCGGCACGAATCATACC 88746 | ||| ||||| ||||||| | || ||| |||||||| || Sbjct 579994 ACAACCGGTATGGAAAGCTTCACCACCACGGATTGGGCTGCCTAGCGCACGAATACGGCC 579935 Query 88747 AACGTTAATACCAATTCCAGCGCGTTTGGAGATATACTCAACAATTGAAGCAGAAGCCTT 88806 | | || ||||| || || ||||||| || | || | ||| || | | ||||| Sbjct 579934 AGCATTGATACCGATCCCTGCGCGTTGTGAAACGTATTTAACGATAGCACTAGAAGTGGC 579875 Query 88807 ATTGATAGACTTTAATGAATCACCTGCCTCAATAACAACGCATGAACTAAACTGTCGAGT 88866 |||||||| | ||| ||| || ||| |||| |||||||| || || || ||||| Sbjct 579874 GTTGATAGAGTCTAAGCTATCGCCACACTCGATAAGCACGCATGAGCTGAATTGGCGAGT 579815 Query 88867 TGGAGTACGACAACCAGCCATAATAGGAGTTGGCAATGAAATCTGTCGAGTAGATACTGC 88926 || || || |||||||| || || || || || ||||| | || || || || Sbjct 579814 CGGCGTCCGTACCCCAGCCATGATTGGCGTAGGTAAGGAAATTTTAAAGGTCGACACGGC 579755 Query 88927 TTCATAAAAACGA 88939 |||||||| ||| Sbjct 579754 ATCATAAAAGCGA 579742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545909258782800