Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_031007.1 Length=223935 Score E Sequences producing significant alignments: (Bits) Value seq122 224 1e-53 seq83 174 2e-38 >seq122 Length=4874392 Score = 224 bits (248), Expect = 1e-53 Identities = 385/558 (69%), Gaps = 8/558 (1%) Strand=Plus/Plus Query 88174 GAAACCAAGCAACTCATCTTCTCCACAGGGGAAGCCGGATGCGGTAAGACCTTCATGGCC 88233 |||||||||||||| |||||| | || || ||||| || || ||||| |||| || | Sbjct 1498066 GAAACCAAGCAACTGATCTTCGCTACGGGCGAAGCAGGTTGTGGTAAAACCTGGATCAGC 1498125 Query 88234 ACCGCCTACGCGGTAGAGC----GATTACTGGCCAAAGACGTCGATCGTATCATTGTCAC 88289 |||| | |||| ||| |||| | || || || || | || || || || Sbjct 1498126 GCCGCAAAAGCGGCCGAGGCCCTGATTCAT----AAGGATGTTGACAGGATTATAGTGAC 1498181 Query 88290 TCGCCCTGTCCTCTCCGCAGATGAAGACTTAGGCTTCCTGCCGGGCGATGTTGGTGAAAA 88349 |||||| || || || ||||| || || || ||||| || || ||| | ||||| Sbjct 1498182 TCGCCCGGTACTTCAGGCGGATGAGGATTTGGGATTCCTTCCAGGGGATATCTCAGAAAA 1498241 Query 88350 GTTCGCGCCTTACTTCCGACCTGTTTACGATGTGCTCTTAAAACGTCTGGGCAGCCGTTT 88409 ||||| || || ||||| || || || || || || | |||||||| ||| || Sbjct 1498242 ATTCGCCCCGTATTTCCGGCCGGTATATGACGTTCTGGTTAAACGTCTTGGCTCTTCCTT 1498301 Query 88410 CTTACAATACTGCCTGAAACCGGGTATAGACAAGGTTGAGATAGCTCCCTTCGCCTATAT 88469 | || ||||||||| || | || | ||| || || || || || || |||||||| Sbjct 1498302 TATGCAGTACTGCCTGCGTCCCGAAATTGGCAAAGTGGAAATTGCGCCGTTTGCCTATAT 1498361 Query 88470 GCGTGGCCGCAACTTCGAGAACGCGGTCGTTATCTTAGATGAAGCTCAGAACACCACTGC 88529 ||| ||||||| || || ||||| || || || | ||||| || |||||| ||| || Sbjct 1498362 GCGAGGCCGCACGTTTGAAAACGCCGTGGTGATTCTGGATGAGGCGCAGAACGTCACCGC 1498421 Query 88530 TCAGCAGATGAAGCTCTTCCTGACCCGTATCGGGGAGAACTGTATCGTTATCGTTAACGG 88589 || |||||| | |||||||| || | ||||| ||| | ||| || |||||||| Sbjct 1498422 CGCCCAAATGAAGATGTTCCTGACGCGCCTTGGGGAAAACGTGACCGTCATTGTTAACGG 1498481 Query 88590 TGACGTCACTCAGTGCGACTTACCTTCCGGGGTGAAGTCGGGACTGGCCGACGCATTAGC 88649 || |||| ||||| || ||||| ||| || |||| || ||||| ||||| | | Sbjct 1498482 CGATATCACCCAGTGTGATTTACCGTCCCATGTTCAGTCCGGCCTGGCTGACGCGCTGTC 1498541 Query 88650 CCGTTTCGAAGAAGACGAATTAGTCGGCATCGTTCGTTTTACGAAAGATGACTGTGTGCG 88709 || ||| | || ||||| | || || | || ||||| ||||| ||||| ||||| Sbjct 1498542 GCGCTTCCAGGACGACGAGATGGTGAGCGTGGTCCGTTTCGGAAAAGAGGACTGCGTGCG 1498601 Query 88710 CTCTCCGCTTTGTCAGCG 88727 |||| ||| |||||||| Sbjct 1498602 TTCTCAGCTCTGTCAGCG 1498619 Score = 178 bits (196), Expect = 2e-39 Identities = 241/336 (72%), Gaps = 0/336 (0%) Strand=Plus/Minus Query 99839 GTTCCTGACCGTCAGTTATCGTGTCAGCTTTATCAACGCAGCGCCGATGTGTTCTTAGGG 99898 ||| | ||| | || | || || || || ||||| ||| | |||| | ||| | || Sbjct 3442383 GTTGCGGACGGCAAGCTCTCCTGCCAACTGTATCAGCGCTCCTGCGATATCTTCCTCGGC 3442324 Query 99899 GTGCCGTTTAATATTGCGTCATACGCTTTGTTGATCCACATGTTTGCACAGCAGGCTAAC 99958 ||||||| ||||| || ||||||||| || | || ||| | || |||||| || Sbjct 3442323 CTGCCGTTCAATATCGCCAGCTACGCTTTGCTGGTGCATATGATGGCCCAGCAGTGCGAC 3442264 Query 99959 ATGACCGTGGGTGATTTCGTCTGGTCTGGTGGTGACGTACATCTGTACAATAACCATCTG 100018 || ||||||||||| |||||| | ||||| || |||||||||| ||||| ||| Sbjct 3442263 CTGGAAGTGGGTGATTTTGTCTGGACCGGTGGCGATACCCATCTGTACAGCAACCACCTG 3442204 Query 100019 GAACAAACCCGTACCCAGTTAGGTCGTGCCCCGCGTCCGTTACCTAAGCTGATTATCAAA 100078 || || || || ||| | || | ||||| | | || |||||||||||||| Sbjct 3442203 GAGCAGACGCGCCTGCAGCTGACGCGCGAACCGCGCGCCCTGCCGAAGCTGATTATCAAG 3442144 Query 100079 CGTAAGCCAGACTCCATCTTCGAATATAAGTTTGAAGACTTCGAACTTGAAGGCTACGAC 100138 || ||||| || || |||||||| ||| ||||| |||||||| | ||||| |||||| Sbjct 3442143 CGCAAGCCGGAGTCTATCTTCGACTATCGCTTTGATGACTTCGAGATCGAAGGTTACGAC 3442084 Query 100139 CCGCATCCTGCAATCAAAGCACCGGTCGCGATATGA 100174 |||||||| || || ||||| |||||||| || ||| Sbjct 3442083 CCGCATCCGGCCATTAAAGCCCCGGTCGCCATCTGA 3442048 Score = 176 bits (194), Expect = 6e-39 Identities = 226/307 (74%), Gaps = 6/307 (2%) Strand=Plus/Minus Query 99138 GAGCAATCATGGAACAGTATCAAGATTTAATGACTCGCGTAAT-GAGCGAAGGCGTGCCG 99196 ||| || ||| ||||||||| | |||||| | ||| | |||| | ||| ||| Sbjct 3442850 GAGGAAAAATGAAACAGTATCTGGCGTTAATGCAGCACGTGCTCGAGC-AGGGCACGCCC 3442792 Query 99197 AAGAAAGACCGTACGGGAACCGGTACCCTGTCTATTTTCGGGCACCAGATGCGTTTCAAT 99256 || || ||||| || |||||||| || ||||| ||||| || || ||||||||||||||| Sbjct 3442791 AAAAATGACCGCACCGGAACCGGCACGCTGTCGATTTTTGGTCATCAGATGCGTTTCAAT 3442732 Query 99257 CTGCAAGAAGGCTTTCCGCTGGTAACGACTAAGCGCTGTCACATGCGTTCGATTATTCAC 99316 ||||| || || ||||||||||| || || ||| || || |||| || || ||||| Sbjct 3442731 CTGCAGGACGGTTTTCCGCTGGTCACCACCAAGAAGTGCCATTTGCGCTCTATCATTCAT 3442672 Query 99317 GAACTGCTGTGGTTCCTGAAAGGCGATACCAATGTCAAATATTTAAATGATAAT--GGTG 99374 || |||||||||||||| || || || ||||| || || | || || ||| |||| Sbjct 3442671 GAGCTGCTGTGGTTCCTTAACGGTGACACCAACATCGCCTACCTGAAGGAAAATAAGGTG 3442612 Query 99375 TAACTATTTGGGACGAATGGAAGAACAAAGATGGCGACCTCGGACCGGTATACGGTAAAC 99434 | | || |||||||| ||| | || | || |||||||| ||||| || || |||| Sbjct 3442611 T--CGATCTGGGACGAGTGGGCCGATGAAAAGGGTGACCTCGGGCCGGTTTATGGCAAAC 3442554 Query 99435 AGTGGCG 99441 ||||||| Sbjct 3442553 AGTGGCG 3442547 Score = 105 bits (116), Expect = 1e-17 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 99569 CAGATCGACCAAATCTCCAAGGCCATGGACCAGTTGAAAAACGACCCGGATAACCGTCGT 99628 ||||||||||| | ||||| | || ||| |||||| ||||||||| || || Sbjct 3442521 CAGATCGACCAGCTGAGCAAGGTGGTCGAACAGCTGAAAAGCGACCCGGACTCGCGCCGC 3442462 Query 99629 ATCATCGTGTCGGCATGGAACGTAGCTGACCTCGACGAAATGGCTTTAGCACCGTGCCAC 99688 |||||||| || ||||||||||| | || || || || ||||| | || ||||||||| Sbjct 3442461 ATCATCGTTTCTGCATGGAACGTCGGCGAACTGGATGAGATGGCGCTGGCCCCGTGCCAC 3442402 Query 99689 GCATTCTTCCAGTTCTAC 99706 || ||||||||||||||| Sbjct 3442401 GCGTTCTTCCAGTTCTAC 3442384 >seq83 Length=912621 Score = 174 bits (192), Expect = 2e-38 Identities = 316/457 (69%), Gaps = 4/457 (1%) Strand=Plus/Minus Query 88189 ATCTTCTCCACAGGGGAAGCCGGATGCGGTAAGACCTTCATGGCCACCGCCTACGCGGTA 88248 || ||| | ||||| ||||| || || ||||| || | || ||||| | || | | Sbjct 345607 ATTTTCGCTACAGGCGAAGCGGGGTGTGGTAAAACTTGGATCAGTACCGCTAAAGCCGCA 345548 Query 88249 GAGCGATTACTGGCCAAAGACGTCGATCGTATCATTGTCACTCGCCCTGTCCTCTCCGCA 88308 || ||| | |||||| | || || |||||||| |||||||| || | || Sbjct 345547 GAAGCCTTAATTAACAAAGATATTGAGCGGATCATTGTGACTCGCCCAGTGTTACAAGCC 345488 Query 88309 GATGAAGACTTAGGCTTCCTGCCGGGCGATGTTGGTGAAAAGTTCGCGCCTTACTTCCGA 88368 ||||||||||| || ||||| || ||||| || |||||| || || ||||||||||| Sbjct 345487 GATGAAGACTTGGGTTTCCTCCCTGGCGACATTTCTGAAAAATTTGCTCCTTACTTCCGC 345428 Query 88369 CCTGTTTACGATGTGCTCTTAAAACGTCTGGGCAGCCGTTTCTTACAATACTGCCTGAAA 88428 || || || || || | | ||||| |||| | ||| | || ||||| | Sbjct 345427 CCGGTCTATGACGTATTAGTTAAACGCTTGGGGTCCTCTTTTATGCACTACTGTTTACGC 345368 Query 88429 CCGGGTATAGACAAGGTTGAGATAGCTCCCTTCGCCTATATGCGTGGCCGCAACTTCGAG 88488 || | || | || ||||| || || || ||||| |||||||| ||| | | ||| ||| Sbjct 345367 CCTGAAATTGCGAAAGTTGAAATTGCACCTTTCGCTTATATGCGGGGCAGAACCTTTGAG 345308 Query 88489 AACGCGGTCGTTATCTTAGATGAAGCTCAGAACACCACTGC-TCAGCAGATGAAGCTCTT 88547 || || ||||||| | |||||||| |||||| || || ||| || ||||| | || Sbjct 345307 AATGCTTTCGTTATTCTTGATGAAGCGCAGAACGTTACCGCCTCA-CAAATGAAAATGTT 345249 Query 88548 CCTGACCCGTATCGGGGAGAACTGT-ATCGTTATCGTTAACGGTGACGTCACTCAGTGCG 88606 ||| || || | |||||||| ||| | ||| |||||||||||||| | || || || | Sbjct 345248 CCTCACTCGCTTAGGGGAGAA-TGTGACCGTGATCGTTAACGGTGATATTACCCAATGTG 345190 Query 88607 ACTTACCTTCCGGGGTGAAGTCGGGACTGGCCGACGC 88643 || |||| | || || || || || || || || || Sbjct 345189 ACCTACCAGCAGGTGTTAAATCCGGGCTTGCTGATGC 345153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716407909824600