Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_031010.1 Length=246390 Score E Sequences producing significant alignments: (Bits) Value seq122 170 3e-37 >seq122 Length=4874392 Score = 170 bits (188), Expect = 3e-37 Identities = 228/317 (72%), Gaps = 0/317 (0%) Strand=Plus/Minus Query 203290 CTATCGTGTCAGTTGTATCAGCGCAGCGCCGATGTCTTCTTAGGCGTGCCGTTTAACATC 203349 || || || || ||||||||||| | |||| ||||| | ||| ||||||| || ||| Sbjct 3442368 CTCTCCTGCCAACTGTATCAGCGCTCCTGCGATATCTTCCTCGGCCTGCCGTTCAATATC 3442309 Query 203350 GCCTCGTATGCTTTACTGACTGAGATGGTTGCTCAGCAGGTCAACATGGTGGCCGAGGAG 203409 ||| || ||||| ||| | ||| | || |||||| | || ||| | | || Sbjct 3442308 GCCAGCTACGCTTTGCTGGTGCATATGATGGCCCAGCAGTGCGACCTGGAAGTGGGTGAT 3442249 Query 203410 TTCGTCTGGACAGGCGGTGATACACATCTGTATTCCAACCATCTGGAGCAGGCCCGTCTG 203469 || |||||||| || || ||||| |||||||| |||||| ||||||||| | || ||| Sbjct 3442248 TTTGTCTGGACCGGTGGCGATACCCATCTGTACAGCAACCACCTGGAGCAGACGCGCCTG 3442189 Query 203470 CAGTTAACTCGTGACCCGCACCCATTACCGCGTCTGAAATTCAAACGTAAGCCCGAGTCT 203529 ||| | || || || |||| | | | ||| |||| |||| || ||||| |||||| Sbjct 3442188 CAGCTGACGCGCGAACCGCGCGCCCTGCCGAAGCTGATTATCAAGCGCAAGCCGGAGTCT 3442129 Query 203530 ATCTTCGACTACCAGTTCGAAGACTTTGAAATCGAAGGCTACGTTTCCCACGACGCCATC 203589 ||||||||||| | || || ||||| || |||||||| |||| | || ||||| Sbjct 3442128 ATCTTCGACTATCGCTTTGATGACTTCGAGATCGAAGGTTACGACCCGCATCCGGCCATT 3442069 Query 203590 AAAGCACCGGTTGCCAT 203606 ||||| ||||| ||||| Sbjct 3442068 AAAGCCCCGGTCGCCAT 3442052 Score = 131 bits (144), Expect = 3e-25 Identities = 149/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 202543 AAGAAAGACCGTACCGGCACCGGCACGCGCTCCTTGTTCGGGGCCCAGATGCGGTTTGAC 202602 || || ||||| ||||| |||||||||| || | || || |||||||| || | Sbjct 3442791 AAAAATGACCGCACCGGAACCGGCACGCTGTCGATTTTTGGTCATCAGATGCGTTTCAAT 3442732 Query 202603 CTGACCGAAGGCTTCCCACTGGTGACCACGAAAAAGGTTCACCTCCGTTCTATCATTCAC 202662 ||| || || || || ||||| ||||| || ||| || | || ||||||||||| Sbjct 3442731 CTGCAGGACGGTTTTCCGCTGGTCACCACCAAGAAGTGCCATTTGCGCTCTATCATTCAT 3442672 Query 202663 GAGCTGCTGTGGTTCCTGAAAGGGGACACCAACATCAGTTACCTGAACGATAACGGGGTC 202722 ||||||||||||||||| || || |||||||||||| |||||||| || || ||| Sbjct 3442671 GAGCTGCTGTGGTTCCTTAACGGTGACACCAACATCGCCTACCTGAAGGAAAATAAGGTG 3442612 Query 202723 ACTATCTGGGACGAATGGGC 202742 | ||||||||||| ||||| Sbjct 3442611 TCGATCTGGGACGAGTGGGC 3442592 Score = 95.1 bits (104), Expect = 2e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 202954 GGCGAACTCGGCCCAGTATACGGAAAACAGTGGCGGGATTGGGTTGGTGCAGATGGTCGG 203013 || || ||||| || || || || ||||||||||| |||| | || ||||| || Sbjct 3442581 GGTGACCTCGGGCCGGTTTATGGCAAACAGTGGCGCAGCTGGGGGGCAGCGGATGGGCGC 3442522 Query 203014 CATCATGACCAAATCACCAAAGTCATCGACCAGCTGCGTAACGATCCGGATAACCGCCGC 203073 || ||||| | | ||| || |||| |||||| | ||| ||||| |||||| Sbjct 3442521 CAGATCGACCAGCTGAGCAAGGTGGTCGAACAGCTGAAAAGCGACCCGGACTCGCGCCGC 3442462 Query 203074 ATTATTGTCAGCGCATGGAATGTCGGTGAGTTGGACCAGATGGCGTTAGCACCGTGTCAT 203133 || || || |||||||| ||||| || |||| |||||||| | || ||||| || Sbjct 3442461 ATCATCGTTTCTGCATGGAACGTCGGCGAACTGGATGAGATGGCGCTGGCCCCGTGCCAC 3442402 Query 203134 TCTTTCTTCCAGTTCTA 203150 | |||||||||||||| Sbjct 3442401 GCGTTCTTCCAGTTCTA 3442385 Score = 93.3 bits (102), Expect = 7e-14 Identities = 72/83 (87%), Gaps = 2/83 (2%) Strand=Plus/Plus Query 2619 TTTTAGGGAAGTAGTTCAATTGGTAGAGCGTCGGTCTCCAAAACCGGTTGTTGGAGGTTC 2678 |||||||| ||||||||||||||||||| |||||||||||||||| |||||| |||| Sbjct 4587358 TTTTAGGGGCGTAGTTCAATTGGTAGAGCACCGGTCTCCAAAACCGGGTGTTGGGAGTTC 4587417 Query 2679 GAGTC-CTCTCTTCCCTGCCAAA 2700 ||||| ||| | |||||||||| Sbjct 4587418 GAGTCTCTC-CGCCCCTGCCAAA 4587439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 788258284398000