Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_031011.1 Length=168993 Score E Sequences producing significant alignments: (Bits) Value seq122 178 1e-39 >seq122 Length=4874392 Score = 178 bits (196), Expect = 1e-39 Identities = 145/176 (82%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 126785 CTCTCGGTAAAGGTACGAGCGATAACATCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAG 126844 || || ||||||||||| | || || || ||||||||||| || |||| ||||||||| Sbjct 3215644 CTTTCAGTAAAGGTACGCGTAATCACGTCACGCTGCTGTTCTGGCGTCAAAGAGTTAAAA 3215703 Query 126845 CGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACT 126904 || || ||||||||||| || || |||||||||||||||||||| ||||| ||||| || Sbjct 3215704 CGCACGGCATAACCGGAAACGCGAATGGTCAGCTGCGGATATTTCTCCGGGTGCTTCACC 3215763 Query 126905 GCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTC 126960 || |||||||| |||||||| | ||| ||||| |||||||| || ||||| || || Sbjct 3215764 GCCTCTTCCAGCGTTTCACGGCTCAGGACGTTGACGTTCAGATGCTGACCGCCCTC 3215819 Score = 120 bits (132), Expect = 3e-22 Identities = 137/184 (74%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 126778 TTACAAACTCTCGGTAAAGGTACGAGCGATAACATCGCGCTGCTGTTCCGGAGTCAGAGA 126837 ||||| |||| || |||||||| | ||| ||||| |||||||||| |||||| || Sbjct 1181308 TTACATGCTCTGAGTGAAGGTACGGGTGATCACATCCTGCTGCTGTTCTTTAGTCAGCGA 1181367 Query 126838 GTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATG 126897 ||| || || || ||||| || || || || ||||| | |||||||||||||||||| | Sbjct 1181368 GTTGAAACGTACCGCATAGCCCGACACGCGAATGGTTAACTGCGGATATTTTTCCGGGTC 1181427 Query 126898 CTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACC 126957 | | || || ||| ||||||| || ||||| ||||| ||||| ||||| || Sbjct 1181428 TTCCATCGCTTCCAGCAGCATTTCACGGTTCATCACGTTGACGTTGAGGTGCTGACCCCC 1181487 Query 126958 TTCA 126961 |||| Sbjct 1181488 TTCA 1181491 Score = 91.5 bits (100), Expect = 2e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 38199 TTCAGTTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCCTTTGTTATTT 38258 ||||| || || || || ||||||||||| | |||||| |||| ||||| ||| || Sbjct 2806277 TTCAGCTGCACGCCGTAGTCCATATGACGCACGCGGTTGCCTTCAACGCCGCGGTTGTTC 2806218 Query 38259 TTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCG 38318 |||| || || || |||| ||||||| |||||| || || || | || || || Sbjct 2806217 TTCAGCACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAACAGGGTCGCTGCA 2806158 Query 38319 CCGCCACGAATTCCGCCCTGTGAACATGAGTTAACTGCAGCCTGAAAATGTTTCCAAAAA 38378 ||||| || | |||||||| || || || || || || | ||| || || || | || Sbjct 2806157 CCGCCGCGCACGCCGCCCTGAGAGCAGGACTTCACCGCGGTCTGGAAGTGCTTATAGAAC 2806098 Query 38379 GGAAT 38383 ||||| Sbjct 2806097 GGAAT 2806093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 540607273894440