Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_031020.1 Length=163201 Score E Sequences producing significant alignments: (Bits) Value seq122 156 4e-33 seq109 109 6e-19 >seq122 Length=4874392 Score = 156 bits (172), Expect = 4e-33 Identities = 146/183 (80%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 52708 TACATAGCT-TCAGTAAATGTACGAGAAATTACATCACGCTGTTGTTCTTTGGTCAGGGA 52766 ||||| ||| | ||| || ||||| | || ||||| |||| |||||||| ||||| || Sbjct 1181309 TACAT-GCTCTGAGTGAAGGTACGGGTGATCACATCCTGCTGCTGTTCTTTAGTCAGCGA 1181367 Query 52767 GTTAAAGCGAACAGCATAACCAGAAACACGGATAGTCAACTGTGGGTATTTTGTAGGGTC 52826 ||| || || || ||||| || || || || || || ||||| || |||||| ||||| Sbjct 1181368 GTTGAAACGTACCGCATAGCCCGACACGCGAATGGTTAACTGCGGATATTTTTCCGGGTC 1181427 Query 52827 TTCCATCGCTTCAAGCAACATTTCACGATTCATTACGTTAACGTTCAGGTGCTGACCGCC 52886 |||||||||||| |||| ||||||||| ||||| ||||| ||||| ||||||||||| || Sbjct 1181428 TTCCATCGCTTCCAGCAGCATTTCACGGTTCATCACGTTGACGTTGAGGTGCTGACCCCC 1181487 Query 52887 TTC 52889 ||| Sbjct 1181488 TTC 1181490 Score = 127 bits (140), Expect = 2e-24 Identities = 136/180 (76%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 52716 TTCAGTAAATGTACGAGAAATTACATCACGCTGTTGTTCTTTGGTCAGGGAGTTAAAGCG 52775 ||||||||| ||||| | ||| || |||||||| |||||| |||| |||||||| || Sbjct 3215646 TTCAGTAAAGGTACGCGTAATCACGTCACGCTGCTGTTCTGGCGTCAAAGAGTTAAAACG 3215705 Query 52776 AACAGCATAACCAGAAACACGGATAGTCAACTGTGGGTATTTTGTAGGGTCTTCCATCGC 52835 || |||||||| ||||| || || |||| ||| || ||||| |||| | || ||| Sbjct 3215706 CACGGCATAACCGGAAACGCGAATGGTCAGCTGCGGATATTTCTCCGGGTGCTTCACCGC 3215765 Query 52836 TTCAAGCAACATTTCACGATTCATTACGTTAACGTTCAGGTGCTGACCGCCTTCGACACG 52895 || || | ||||||| ||| ||||| |||||||| ||||||||||| || || || Sbjct 3215766 CTCTTCCAGCGTTTCACGGCTCAGGACGTTGACGTTCAGATGCTGACCGCCCTCCACGCG 3215825 Score = 116 bits (128), Expect = 4e-21 Identities = 73/79 (92%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 66403 TGGCACACCCTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTATCC 66462 ||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 814416 TGGTACGCCCTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGGTGCTCTATCC 814357 Query 66463 AGCTGAGCTAAGAGTGCAT 66481 | |||||||||| | |||| Sbjct 814356 AACTGAGCTAAGGGCGCAT 814338 >seq109 Length=705085 Score = 109 bits (120), Expect = 6e-19 Identities = 77/88 (88%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 66400 AAATGGCACACCCTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTA 66459 |||||| || ||||| ||||||||||||| |||||||||||||||||||||| ||||||| Sbjct 321825 AAATGGTACGCCCTATAGGATTCGAACCTATGACCTACGGCTTAGAAGGCCGGTGCTCTA 321766 Query 66460 TCCAGCTGAGCTAAGAGTGCATTAATTT 66487 |||| |||||||||| | || | |||| Sbjct 321765 TCCAACTGAGCTAAGGGCGCCCTGATTT 321738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 522074324906280