Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_031030.1 Length=170788 Score E Sequences producing significant alignments: (Bits) Value seq122 132 5e-26 seq83 127 2e-24 >seq122 Length=4874392 Score = 132 bits (146), Expect = 5e-26 Identities = 106/128 (83%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 60722 GTGAATGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 60781 || || ||||| | || ||||| ||||||||||| || |||| ||||||||| || || Sbjct 3215650 GTAAAGGTACGCGTAATCACGTCACGCTGCTGTTCTGGCGTCAAAGAGTTAAAACGCACG 3215709 Query 60782 GCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCT 60841 ||||||||||| || || |||||||||||||||||||| ||||| ||||| || || ||| Sbjct 3215710 GCATAACCGGAAACGCGAATGGTCAGCTGCGGATATTTCTCCGGGTGCTTCACCGCCTCT 3215769 Query 60842 TCCAGAGT 60849 ||||| || Sbjct 3215770 TCCAGCGT 3215777 Score = 95.1 bits (104), Expect = 1e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 60709 TTACAAACTCTTGGTGAATGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGA 60768 ||||| |||| ||||| ||||| | ||| || || |||||||||| |||||| || Sbjct 1181308 TTACATGCTCTGAGTGAAGGTACGGGTGATCACATCCTGCTGCTGTTCTTTAGTCAGCGA 1181367 Query 60769 GTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGG 60825 ||| || || || ||||| || || || || ||||| | |||||||||||||||||| Sbjct 1181368 GTTGAAACGTACCGCATAGCCCGACACGCGAATGGTTAACTGCGGATATTTTTCCGG 1181424 Score = 91.5 bits (100), Expect = 2e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 139476 TTCAGTTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCCTTTGTTATTT 139535 ||||| || || || || ||||||||||| | |||||| |||| ||||| ||| || Sbjct 2806277 TTCAGCTGCACGCCGTAGTCCATATGACGCACGCGGTTGCCTTCAACGCCGCGGTTGTTC 2806218 Query 139536 TTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCG 139595 |||| || || || |||| ||||||| |||||| || || || | || || || Sbjct 2806217 TTCAGCACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAACAGGGTCGCTGCA 2806158 Query 139596 CCGCCACGAATTCCACCCTGTGAACATGATTTAACTGCAGTCTGAAAATGTTTCCAAAAA 139655 ||||| || | || ||||| || || || || || || ||||| || || || | || Sbjct 2806157 CCGCCGCGCACGCCGCCCTGAGAGCAGGACTTCACCGCGGTCTGGAAGTGCTTATAGAAC 2806098 Query 139656 GGAAT 139660 ||||| Sbjct 2806097 GGAAT 2806093 Score = 87.8 bits (96), Expect = 2e-12 Identities = 90/114 (79%), Gaps = 3/114 (3%) Strand=Plus/Minus Query 68812 AAGTTTGGCGGA-CATGCATGGATTCGAACCATGGACCAATTGATTAACAGTCAACTGCT 68870 |||||||| || | |||| ||||||||||| |||||||||||||| ||||||||||| Sbjct 980280 AAGTTTGGTGGGTCGTGCA-GGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCT 980222 Query 68871 CTACC-ACTGAGCTACACATCCAAATTGGTGGGGAGTGATGGAGTCGAACCACC 68923 ||||| ||||||||| | || | ||||||| ||| || ||||||| || Sbjct 980221 CTACCAACTGAGCTAACGACCCGATATGGTGGGTGATGACGGGCTCGAACCGCC 980168 Score = 82.4 bits (90), Expect = 8e-11 Identities = 79/99 (80%), Gaps = 2/99 (2%) Strand=Plus/Minus Query 68826 TGCATGGATTCGAACCATGGACCAATTGATTAACAGTCAACTGCTCTACC-ACTGAGCTA 68884 |||| ||||||||||| |||||||||||||| |||||||||||||||| ||||||||| Sbjct 980574 TGCA-GGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTA 980516 Query 68885 CACATCCAAATTGGTGGGGAGTGATGGAGTCGAACCACC 68923 | || | ||||||| ||| || ||||||| || Sbjct 980515 ACGACCCGATATGGTGGGTGATGACGGGCTCGAACCGCC 980477 Score = 82.4 bits (90), Expect = 8e-11 Identities = 79/99 (80%), Gaps = 2/99 (2%) Strand=Plus/Minus Query 68826 TGCATGGATTCGAACCATGGACCAATTGATTAACAGTCAACTGCTCTACC-ACTGAGCTA 68884 |||| ||||||||||| |||||||||||||| |||||||||||||||| ||||||||| Sbjct 3034727 TGCA-GGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTA 3034669 Query 68885 CACATCCAAATTGGTGGGGAGTGATGGAGTCGAACCACC 68923 | || | ||||||| ||| || ||||||| || Sbjct 3034668 ACGACCCGATATGGTGGGTGATGACGGGCTCGAACCGCC 3034630 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 69901 TTGGAGCGGATAATGAGAATCGAACTCACATCATCAGATTGGAAGTCTGAGGTAAT-GCC 69959 ||||||||| | | ||||||||| | ||||||||| ||||||| |||||||||| ||| Sbjct 4690227 TTGGAGCGGGCAGCGGGAATCGAACCCGCATCATCAGCTTGGAAGGCTGAGGTAATAGCC 4690168 Query 69960 ATTATACGATATCCGCA 69976 |||||||||| ||||| Sbjct 4690167 ATTATACGATGCCCGCA 4690151 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 69901 TTGGAGCGGATAATGAGAATCGAACTCACATCATCAGATTGGAAGTCTGAGGTAAT-GCC 69959 ||||||||| | | ||||||||| | ||||||||| ||||||| |||||||||| ||| Sbjct 4697378 TTGGAGCGGGCAGCGGGAATCGAACCCGCATCATCAGCTTGGAAGGCTGAGGTAATAGCC 4697319 Query 69960 ATTATACGATATCCGCA 69976 |||||||||| ||||| Sbjct 4697318 ATTATACGATGCCCGCA 4697302 >seq83 Length=912621 Score = 127 bits (140), Expect = 2e-24 Identities = 288/433 (67%), Gaps = 0/433 (0%) Strand=Plus/Minus Query 139481 TTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCCTTTGTTATTTTTCAA 139540 ||| || || ||||| | ||||| | ||||| |||| || || ||||||||||| Sbjct 580174 TTGTACGCCGTAATCTAGGTGACGGACACGGTTACCTTCAACACCACGGTTATTTTTCAG 580115 Query 139541 AACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCC 139600 || | | |||||| |||||| ||||| ||||| ||| | || || || || || Sbjct 580114 GACTAATAAGCTTTCAATTTCCAAGTGCCACATAGGGTAAAACAGTGTCGCGGCACCCCC 580055 Query 139601 ACGAATTCCACCCTGTGAACATGATTTAACTGCAGTCTGAAAATGTTTCCAAAAAGGAAT 139660 || | || || || || || ||||| || || ||||| || ||||| | || || || Sbjct 580054 GCGTACGCCGCCTTGCGAGCAAGATTTCACGGCCGTCTGGAAGTGTTTGTAGAACGGGAT 579995 Query 139661 AACACCAGTATGACGTACTTCACCCATGCCAATTTTAGAACCTTCAGCACGAATCATACC 139720 | ||| ||||| ||||||| | ||| ||| |||||||| || Sbjct 579994 ACAACCGGTATGGAAAGCTTCACCACCACGGATTGGGCTGCCTAGCGCACGAATACGGCC 579935 Query 139721 AACATTAATACCAATTCCAGCGCGTTTAGAGATATATTCAACAATTGAAGCGGAAGCCTT 139780 | |||| ||||| || || ||||||| || | |||| ||| || | | |||| Sbjct 579934 AGCATTGATACCGATCCCTGCGCGTTGTGAAACGTATTTAACGATAGCACTAGAAGTGGC 579875 Query 139781 ATTGATAGACTTCAATGAATCTCCTGCCTCAATAACGACGCATGAACTAAACTGCCGAGT 139840 |||||||| | || ||| || ||| |||| |||||||| || || || ||||| Sbjct 579874 GTTGATAGAGTCTAAGCTATCGCCACACTCGATAAGCACGCATGAGCTGAATTGGCGAGT 579815 Query 139841 TGGAGTACGACAGCCAGCCATAATAGGAGTTGGTAATGAAATCTGTCGAGTAGATACCGC 139900 || || || |||||||| || || || ||||| ||||| | || || || || Sbjct 579814 CGGCGTCCGTACCCCAGCCATGATTGGCGTAGGTAAGGAAATTTTAAAGGTCGACACGGC 579755 Query 139901 TTCATAAAAACGA 139913 |||||||| ||| Sbjct 579754 ATCATAAAAGCGA 579742 Score = 91.5 bits (100), Expect = 2e-13 Identities = 81/99 (82%), Gaps = 2/99 (2%) Strand=Plus/Minus Query 68826 TGCATGGATTCGAACCATGGACCAATTGATTAACAGTCAACTGCTCTACC-ACTGAGCTA 68884 |||| ||||||||||| |||||||||||||| |||||||||||||||| ||||||||| Sbjct 700971 TGCA-GGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTA 700913 Query 68885 CACATCCAAATTGGTGGGGAGTGATGGAGTCGAACCACC 68923 | || || ||||||| ||| ||| ||||||| || Sbjct 700912 ACGACCCGAAGTGGTGGGTGATGACGGATTCGAACCGCC 700874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546350824211040