Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq45 111 2e-19 seq93 87.8 2e-12 >seq45 Length=1811775 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 76859 GAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTG 76918 |||||||||| ||| || || |||| | || || |||||||| ||||| | || || Sbjct 848717 GAAATGCATGGATGTGAGCTTCCCATAATTTGGCTCAGCTATATGGATATTTAGTGATTG 848776 Query 76919 ACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAAT 76978 | |||||| ||||| || ||||||||||| ||||||||||||| || || || | ||| Sbjct 848777 AGATTGATCAATGAAGGCCCCTCTATCAGCAGCCATTTTTATAACAGTTTTCTGTGAAAT 848836 Query 76979 TTCCCAAATAGTTTTG 76994 |||||||| |||||| Sbjct 848837 TTCCCAAACTGTTTTG 848852 Score = 109 bits (120), Expect = 8e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 78153 TTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATA 78212 || || || || || |||| ||| | || ||||| || || || | | ||| |||||| Sbjct 850495 TTGTTTCCACCTTGGTCTACGTATTTAGCTGTGTTGTTGTACACACGAAGCATGGGAATA 850554 Query 78213 ATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTA 78272 ||||| || ||||| ||||| || |||| |||||||||||| | || |||||| | Sbjct 850555 ATACCATTTGATGTACCATTAGTGCCAGCAATATAACTTCCCTTGGCACGAATACAGTGA 850614 Query 78273 ATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCG 78332 ||| | || || ||||| || |||||| || | ||| || ||||| ||| ||| Sbjct 850615 ATGTTAACACCAATACCTCCAGCTGACTTAGAAATCAAAGCACAGTCTTTCAGTGTGTCG 850674 Query 78333 TAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGA 78382 || || || || ||||| ||||| |||| || || || || ||||| Sbjct 850675 TAAATGCCTTCAATACTATCATCTTTCATAGACAGCAGGAAGCAACTAGA 850724 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 || || ||||| || ||||| || | ||||||||||| || || | || | ||| Sbjct 849144 TGGAACTCTCCTGATAATACCCTCCTTGTGTAAATATTTGATGTGTAGGCCTCAATAGAC 849203 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| || |||||||| || || || || ||||||||||||||||| | ||||||| Sbjct 849204 TCATTATTACCCAAAATCTGCGCTGTTGAGGCAGTTGGCATAGGTGCAAGCAATAAAGAG 849263 Query 77247 TTTCTGAGACCATGTGTT 77264 || || | ||||||| || Sbjct 849264 TTCCTCACACCATGTTTT 849281 >seq93 Length=974399 Score = 87.8 bits (96), Expect = 2e-12 Identities = 103/138 (75%), Gaps = 5/138 (4%) Strand=Plus/Plus Query 47796 TAAAAGTCAACATCTAAAGAAAAATGATTATC----TTCTTGAGACATAACTCCCATTTT 47851 ||||||||| ||||||||| ||| ||| || || || || ||| |||||| || Sbjct 914091 TAAAAGTCAGCATCTAAAGTAAACACATTCTCCGCCTTATT-AGCCATCACTCCCCACTT 914149 Query 47852 TTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 47911 ||||||||||| || || || || |||||||| |||||||| ||||| || | || Sbjct 914150 CTGATATTCACCAACTTTCTTTTCAAAGAAATTAGTCTTGCCTTCTAATGAGATGTGCTC 914209 Query 47912 CATAAAATCAAATGGATT 47929 ||| || |||||||| || Sbjct 914210 CATGAAGTCAAATGGGTT 914227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694614416116320