Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq45 118 2e-21 seq93 116 5e-21 >seq45 Length=1811775 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 76748 TTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATA 76807 || || || || || |||| ||| | || ||||| || || || | | ||| |||||| Sbjct 850495 TTGTTTCCACCTTGGTCTACGTATTTAGCTGTGTTGTTGTACACACGAAGCATGGGAATA 850554 Query 76808 ATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTA 76867 || || || ||||||||||| || |||| |||||||||||| ||||||||| | Sbjct 850555 ATACCATTTGATGTACCATTAGTGCCAGCAATATAACTTCCCTTGGCACGAATACAGTGA 850614 Query 76868 ATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCA 76927 || | || || ||||| || ||||| || | ||||||| ||||| |||||| Sbjct 850615 ATGTTAACACCAATACCTCCAGCTGACTTAGAAATCAAAGCACAGTCTTTCAGTGTGTCG 850674 Query 76928 TAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGA 76977 || ||||| || ||||||||||| |||| || || || || ||||| Sbjct 850675 TAAATGCCTTCAATACTATCATCTTTCATAGACAGCAGGAAGCAACTAGA 850724 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 75454 GAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATATTCATCGACTG 75513 |||||||||| ||| || || |||| | || || |||||||| ||||| | || || Sbjct 848717 GAAATGCATGGATGTGAGCTTCCCATAATTTGGCTCAGCTATATGGATATTTAGTGATTG 848776 Query 75514 ACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAAT 75573 | |||||| ||||| || ||||||||||| ||||||||||||| || || || | ||| Sbjct 848777 AGATTGATCAATGAAGGCCCCTCTATCAGCAGCCATTTTTATAACAGTTTTCTGTGAAAT 848836 Query 75574 TTCCCAAATAGTTTTG 75589 |||||||| |||||| Sbjct 848837 TTCCCAAACTGTTTTG 848852 Score = 98.7 bits (108), Expect = 1e-15 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 76510 ATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACA 76569 ||| ||| ||||||||| ||||||||| ||| | | |||||||| | || ||||| Sbjct 850179 ATACAACTTTTCAAATTCCTCTCCCCAACAGTCAGCAAGACCAGGACTCTGATGAGGACA 850238 Query 76570 CATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAG 76629 ||| | ||| | ||| || || ||| | ||||| || | ||||| ||||||| Sbjct 850239 CATGAGGCTCCATTTCTCATTTTTCTCAACTCTCTTCATGAACAAGTCAGGAATCCATAA 850298 Query 76630 AGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAG 76689 ||| ||| || |||| | | | || || || || || |||||||| || ||||| Sbjct 850299 GGCATAAAAAAGGTCTCTTGCACGAACCTCCTCCTTGCCAGTGTTCTTTTTCAGGTCTAG 850358 Query 76690 GAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGC 76731 ||| || | | ||| | |||||||||||| || || || || Sbjct 850359 GAAATCAAACACATCTGCATGCCATGGTTCAAGGTAGATAGC 850400 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 || || ||||| || ||||| || | ||||||||||| || || | || | ||| Sbjct 849144 TGGAACTCTCCTGATAATACCCTCCTTGTGTAAATATTTGATGTGTAGGCCTCAATAGAC 849203 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 ||||| || |||||||| || || ||||| ||||| ||||||||||| | ||||||| Sbjct 849204 TCATTATTACCCAAAATCTGCGCTGTTGAGGCAGTTGGCATAGGTGCAAGCAATAAAGAG 849263 Query 75842 TTTCTGAGACCATGTGTT 75859 || || | ||||||| || Sbjct 849264 TTCCTCACACCATGTTTT 849281 >seq93 Length=974399 Score = 116 bits (128), Expect = 5e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 46900 TATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAAT 46959 ||||| || ||||| | ||| ||||||||||| |||| ||||| || || |||||||| Sbjct 914959 TATGTGTCGATTAACAAACTGTACATTTCTGAGTGAACATTTTCCATTGCAATCTGAAAG 915018 Query 46960 CCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTC 47019 || || || || | |||||| || | ||| || ||| || |||| ||| || || Sbjct 915019 CCATAGAAGCACCGTGCTTCTGTTACCTGAACTTCTTGACTGAATCTTTCCACTAAGTTT 915078 Query 47020 TCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTT 47079 ||||| || || |||||| ||||||||| || || | ||||| ||||||| ||| Sbjct 915079 TCATTGACAATCCCATCAGAAGCAGCAAAGAAGGCAAGGACATGGGAGATAAAATGTTTC 915138 Query 47080 TCATCGGTAGTCAGTTT 47096 ||||| | ||||| || Sbjct 915139 TCATCCTTTGTCAGCTT 915155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712878586148160