Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_031043.1 Length=229501 Score E Sequences producing significant alignments: (Bits) Value seq83 206 4e-48 seq122 172 8e-38 >seq83 Length=912621 Score = 206 bits (228), Expect = 4e-48 Identities = 377/545 (69%), Gaps = 8/545 (1%) Strand=Plus/Minus Query 88157 TGATATTCGCCACCGGTGAAGCAGGGTGCGGTAAAACATTCCTTTGCGCCGCCTACGCTG 88216 |||| ||||| || || ||||| ||||| |||||||| | | | |||| | || | Sbjct 345609 TGATTTTCGCTACAGGCGAAGCGGGGTGTGGTAAAACTTGGATCAGTACCGCTAAAGCCG 345550 Query 88217 CCGAACGTCTACTGGCAAAAGACTTTGACCGTATCATTGTCACCCGTCCAGTCCTCTCTG 88276 | ||| || | ||||| |||| || |||||||| || || ||||| | | Sbjct 345549 CAGAAGCCTTAATTAACAAAGATATTGAGCGGATCATTGTGACTCGCCCAGTGTTACAAG 345490 Query 88277 CAGATGAAGACCTTGGCTTCTTGCCCGGCGACGTCTCAGAGAAGTTCGCCCCTTACTTCC 88336 | ||||||||| | || ||| | || |||||| | || || || || || |||||||||| Sbjct 345489 CCGATGAAGACTTGGGTTTCCTCCCTGGCGACATTTCTGAAAAATTTGCTCCTTACTTCC 345430 Query 88337 GTCCTGTCTACGACGTGCTAAGCAAACGCTTAGGTGGTCAATTCTTA--CGCTACTGTTT 88394 | || ||||| ||||| || |||||||| | |||| | ||| | ||||||||| Sbjct 345429 GCCCGGTCTATGACGTATTAGTTAAACGCTT--GGGGTCCTCTTTTATGCACTACTGTTT 345372 Query 88395 AAAGCCGGGAATTGACAAGGTAGAGATTGCTCCCTTCGCCTACATGCGCGGACGTAGCTT 88454 | || | ||||| || || || ||||| || ||||| || ||||| || | | ||| Sbjct 345371 ACGCCCTGAAATTGCGAAAGTTGAAATTGCACCTTTCGCTTATATGCGGGGCAGAACCTT 345312 Query 88455 TGAAAATGCAGTCATTTTATTAGATGAAGCTCAGAACACTACTG-CTCAGCAGATGAAGC 88513 ||| ||||| || || | | |||||||| |||||| ||| | |||| || ||||| Sbjct 345311 TGAGAATGCTTTCGTTATTCTTGATGAAGCGCAGAACGTTACCGCCTCA-CAAATGAAAA 345253 Query 88514 TCTTCCTGACACGTATCGGGGAGAACTGT-CTCGTGATTGTCAATGGCGATATTACTCAG 88572 | ||||| || || | |||||||| ||| |||||| || || || |||||||| || Sbjct 345252 TGTTCCTCACTCGCTTAGGGGAGAA-TGTGACCGTGATCGTTAACGGTGATATTACCCAA 345194 Query 88573 TGCGACTTACCGAAAGGGGTACGTTCTGGGCTGGCCGATGCGCTAACGCGTTTTGACACT 88632 || ||| |||| ||| || || ||||| || |||||| | ||||||| | Sbjct 345193 TGTGACCTACCAGCAGGTGTTAAATCCGGGCTTGCTGATGCGATGCAGCGTTTTTCTGAT 345134 Query 88633 GACGACTTAGTTAGCGTTATTCACTTTGTGAAAGACGACTGTGTACGCTCCGAGCTTTGT 88692 || || | || | || | | ||||| || |||||||| ||||| || || ||| Sbjct 345133 GATGATGTTGTCGGGGTGGTACGCTTTGGTGCTGAAGACTGTGTTCGCTCAGAACTCTGT 345074 Query 88693 CAACG 88697 ||||| Sbjct 345073 CAACG 345069 >seq122 Length=4874392 Score = 172 bits (190), Expect = 8e-38 Identities = 233/323 (72%), Gaps = 4/323 (1%) Strand=Plus/Minus Query 100167 CTGTCCTGTCAACTCTACCAACGTAGCGCGGACGTGTTCTTAGGTGTGCCGTTCAATATC 100226 || ||||| ||||| || || || | || | ||| | || |||||||||||||| Sbjct 3442368 CTCTCCTGCCAACTGTATCAGCGCTCCTGCGATATCTTCCTCGGCCTGCCGTTCAATATC 3442309 Query 100227 GCGTCGTACGCTCTGCTGGTTCACATGTTTGCACAACAAGCCAACATGGCCGTGGGCGAC 100286 || |||||| ||||||| || ||| | || || || | || ||| ||||| || Sbjct 3442308 GCCAGCTACGCTTTGCTGGTGCATATGATGGCCCAGCAGTGCGACCTGGAAGTGGGTGAT 3442249 Query 100287 TTCGTCTGGACGGGTGGTGACGTACATCTGTATTCCAACCATCTGGAACAGACACGTACT 100346 || |||||||| ||||| || |||||||| |||||| ||||| ||||| || Sbjct 3442248 TTTGTCTGGACCGGTGGCGATACCCATCTGTACAGCAACCACCTGGAGCAGACGCGCCTG 3442189 Query 100347 CAGCTAGGACGCACT--CCGCGCACATTACCTAAATTGGTTATCAACCGTAAGCCTGACT 100404 ||||| ||||| | |||||| | | || || || ||||||| || ||||| || | Sbjct 3442188 CAGCT--GACGCGCGAACCGCGCGCCCTGCCGAAGCTGATTATCAAGCGCAAGCCGGAGT 3442131 Query 100405 CTATCTTCGACTATAAGTTTGAAGACTTCGAGATTGAGGACTACGAGCCTTACCCCGCCA 100464 |||||||||||||| ||||| ||||||||||| || | ||||| || | || |||| Sbjct 3442130 CTATCTTCGACTATCGCTTTGATGACTTCGAGATCGAAGGTTACGACCCGCATCCGGCCA 3442071 Query 100465 TTAAAGCGCCGGTGGCGATATGA 100487 ||||||| ||||| || || ||| Sbjct 3442070 TTAAAGCCCCGGTCGCCATCTGA 3442048 Score = 87.8 bits (96), Expect = 3e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 99908 CAAGGTCATTGACCAGTTGAAAAACGACCCAGATAACCGACGCATTATTGTCAGTGCATG 99967 |||||| | || ||| |||||| |||||| || || ||||| || || |||||| Sbjct 3442504 CAAGGTGGTCGAACAGCTGAAAAGCGACCCGGACTCGCGCCGCATCATCGTTTCTGCATG 3442445 Query 99968 GAACGTTGCCGACCTCGACGATATGGCCTTAGCGCCATGCCATGCGTTCTTCCAGTTCTA 100027 |||||| | ||| || || || ||||| | || || ||||| ||||||||||||||||| Sbjct 3442444 GAACGTCGGCGAACTGGATGAGATGGCGCTGGCCCCGTGCCACGCGTTCTTCCAGTTCTA 3442385 Query 100028 C 100028 | Sbjct 3442384 C 3442384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 734217715430280