Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_031047.1 Length=170770 Score E Sequences producing significant alignments: (Bits) Value seq122 150 2e-31 seq83 125 8e-24 >seq122 Length=4874392 Score = 150 bits (166), Expect = 2e-31 Identities = 121/146 (83%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 62569 CTGCGTCGTGAAACTCTGGAAGATGCAGTTAAGCATCCGGAAAAATATCCGCAGCTGACC 62628 ||| | |||||||| |||||||| || || ||||| ||||| |||||||||||||||||| Sbjct 3215789 CTGAGCCGTGAAACGCTGGAAGAGGCGGTGAAGCACCCGGAGAAATATCCGCAGCTGACC 3215730 Query 62629 ATCCGTGTATCCGGTTATGCAGTTCGCTTTAACTCTCTGACTCCGGAACAGCAGCGCGAC 62688 || || || ||||||||||| || || ||||||||| |||| || ||||||||||| ||| Sbjct 3215729 ATTCGCGTTTCCGGTTATGCCGTGCGTTTTAACTCTTTGACGCCAGAACAGCAGCGTGAC 3215670 Query 62689 GTTATCGCTCGTACCTTCACCGAGAG 62714 || || | |||||||| || || || Sbjct 3215669 GTGATTACGCGTACCTTTACTGAAAG 3215644 Score = 104 bits (114), Expect = 3e-17 Identities = 272/413 (66%), Gaps = 8/413 (2%) Strand=Plus/Plus Query 151992 AGATTTCATTGCCAACTCCTATTATGGCTGGTTGTCGTACTCCTACTCGACAGTTCAGTT 152051 ||||||| |||| || || |||||| | || || || || || || |||||||| | Sbjct 2805869 AGATTTCGCTGCCGACGCCAATTATGTCCGGCGTGCGCACCCCGACGCGCCAGTTCAGCT 2805928 Query 152052 CATGCGTTGTTATTGAGGCAGGAGATTCGCTGAAGTCTATCAATAAGGC----TTCTGCT 152107 | ||||| | |||||| || || || | || || ||| || | | || Sbjct 2805929 CCTGCGTACTGATTGAGTGCGGCGACAGCCTTGATTCCAT---TAACGCCACCTCCAGCG 2805985 Query 152108 TCAATTGTTGAATATATCTCCAAACGAGCTGGAATCGGCATTAACGTTGGTATGATTCGT 152167 | ||||| | || | || | || || || ||||||||||||| ||| || ||| Sbjct 2805986 -CGATTGTGAAGTACGTTTCTCAGCGTGCCGGTATCGGCATTAACGCCGGTCGCATCCGT 2806044 Query 152168 GCCGAAGGTTCTAAGATTGGCATGGGTGAAGTACGCCATACTGGTGTTATTCCTTTTTGG 152227 || || ||| || ||||||| | ||| || || ||||| || | Sbjct 2806045 GCGCTGGGCAGCCCGATCCGCGGCGGTGAAGCATTCCACACCGGCTGCATTCCGTTCTAT 2806104 Query 152228 AAACATTTTCAGACTGCTGTTAAATCATGCTCACAGGGTGGAATTCGTGGCGGCGCTGCT 152287 || || || ||||| || || || || ||||| ||||| || | || ||||| || || Sbjct 2806105 AAGCACTTCCAGACCGCGGTGAAGTCCTGCTCTCAGGGCGGCGTGCGCGGCGGTGCAGCG 2806164 Query 152288 ACTGCTTATTATCCTATTTGGCATTTGGAAGTTGAAAATCTTCTCGTTTTGAAAAATAAC 152347 || | || || || |||||| ||||||| |||| || || || |||| || ||| Sbjct 2806165 ACCCTGTTCTACCCAATGTGGCATCTGGAAGTGGAAAGCCTGCTGGTGCTGAAGAACAAC 2806224 Query 152348 AAAGGCGTAGAAGAAAACCGCATCCGTCATATGGATTATAGTGTTCAGCTGAA 152400 ||||| |||| |||||| | ||||||||||| || | || |||||||| Sbjct 2806225 CGCGGCGTTGAAGGCAACCGCGTGCGTCATATGGACTACGGCGTGCAGCTGAA 2806277 Score = 98.7 bits (108), Expect = 1e-15 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 62605 CCGGAAAAATATCCGCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAACTCT 62664 |||||||||||||||||| | ||||| || || || || ||||| || || || ||||| Sbjct 1181424 CCGGAAAAATATCCGCAGTTAACCATTCGCGTGTCGGGCTATGCGGTACGTTTCAACTCG 1181365 Query 62665 CTGACTCCGGAACAGCAGCGCGACGTTATCGCTCGTACCTTCACCGAGAGTTTGTAA 62721 |||||| |||||||||| || || ||| | ||||||||||| |||| ||||| Sbjct 1181364 CTGACTAAAGAACAGCAGCAGGATGTGATCACCCGTACCTTCACTCAGAGCATGTAA 1181308 >seq83 Length=912621 Score = 125 bits (138), Expect = 8e-24 Identities = 283/423 (67%), Gaps = 2/423 (0%) Strand=Plus/Plus Query 151964 CGTTTTTATGAAGCAGTATCTACTCGACAGATTTCATTGCCAACTCCTATTATGGCTGGT 152023 || |||||||| || || || || | ||||| || || || || || |||||||| Sbjct 579743 CGCTTTTATGATGCCGTGTCGACCTTTAAAATTTCCTTACCTACGCCAATCATGGCTGGG 579802 Query 152024 TGTCGTACTCCTACTCGACAGTTCAGTTCATGCGTTGTTATTGAGGCAGGAGATTCGCTG 152083 || || || ||||| || ||||| |||||||| |||| ||| || ||| ||| Sbjct 579803 GTACGGACGCCGACTCGCCAATTCAGCTCATGCGTGCTTATCGAGTGTGGCGATA-GCTT 579861 Query 152084 A-AGTCTATCAATAAGGCTTCTGCTTCAATTGTTGAATATATCTCCAAACGAGCTGGAAT 152142 | | |||||||| ||||| | | || ||| |||| | || |||| || || || Sbjct 579862 AGACTCTATCAACGCCACTTCTAGTGCTATCGTTAAATACGTTTCACAACGCGCAGGGAT 579921 Query 152143 CGGCATTAACGTTGGTATGATTCGTGCCGAAGGTTCTAAGATTGGCATGGGTGAAGTACG 152202 ||| || || | ||| |||||||| ||| || | ||||||| Sbjct 579922 CGGTATCAATGCTGGCCGTATTCGTGCGCTAGGCAGCCCAATCCGTGGTGGTGAAGCTTT 579981 Query 152203 CCATACTGGTGTTATTCCTTTTTGGAAACATTTTCAGACTGCTGTTAAATCATGCTCACA 152262 |||||| ||| ||| || || | ||||| || ||||| || || ||||| ||||| || Sbjct 579982 CCATACCGGTTGTATCCCGTTCTACAAACACTTCCAGACGGCCGTGAAATCTTGCTCGCA 580041 Query 152263 GGGTGGAATTCGTGGCGGCGCTGCTACTGCTTATTATCCTATTTGGCATTTGGAAGTTGA 152322 || || | || || || || || || | ||| ||||| ||||| |||||| |||| Sbjct 580042 AGGCGGCGTACGCGGGGGTGCCGCGACACTGTTTTACCCTATGTGGCACTTGGAAATTGA 580101 Query 152323 AAATCTTCTCGTTTTGAAAAATAACAAAGGCGTAGAAGAAAACCGCATCCGTCATATGGA 152382 || | | || ||||||||||| || || |||| ||||| ||||||| | || Sbjct 580102 AAGCTTATTAGTCCTGAAAAATAACCGTGGTGTTGAAGGTAACCGTGTCCGTCACCTAGA 580161 Query 152383 TTA 152385 ||| Sbjct 580162 TTA 580164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546293228720400