Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_031057.1 Length=180219 Score E Sequences producing significant alignments: (Bits) Value seq122 223 4e-53 seq83 201 1e-46 >seq122 Length=4874392 Score = 223 bits (246), Expect = 4e-53 Identities = 453/667 (68%), Gaps = 18/667 (3%) Strand=Plus/Plus Query 43386 TAAGCTGTCGTTACCTACGCCTATTATGGCTGGTGTGCGTACTCCTACGCGTCAGTTTTC 43445 |||| | ||| | || ||||| |||||| | || ||||| || || ||||| ||||| Sbjct 2805867 TAAGATTTCGCTGCCGACGCCAATTATGTCCGGCGTGCGCACCCCGACGCGCCAGTTCAG 2805926 Query 43446 CAGTTGCGTAGTGATTGAATCAGGTGATTCACTGGGTTCTCTGAATGCTGTAACCTCT-- 43503 | |||||| ||||||| | || || || | ||| | || || ||||| Sbjct 2805927 CTCCTGCGTACTGATTGAGTGCGGCGACAGCCTTGATTCCATTAACGCC---ACCTCCAG 2805983 Query 43504 -GCGATCGTGAAGTATATTTCACAACGCGCGGGTATCGGTGTTAATGCTGGACACATTCG 43562 ||||| |||||||| |||| || || || |||||||| |||| || || | ||| || Sbjct 2805984 CGCGATTGTGAAGTACGTTTCTCAGCGTGCCGGTATCGGCATTAACGCCGGTCGCATCCG 2806043 Query 43563 CGCAATGGGTTCTAAAATCCGTGGTGGTGAAGCAGTACATACAGGCGTGATCCCGTTCTG 43622 || |||| ||||| || ||||||||| | || || ||| || ||||||| Sbjct 2806044 TGCGCTGGGCAGCCCGATCCGCGGCGGTGAAGCATTCCACACCGGCTGCATTCCGTTCTA 2806103 Query 43623 GAAACATATTCAGACAGCGGTTAAATCCTGTTCACAAGGTGGCGTTCGTGGTGGTGCTGC 43682 || || | ||||| ||||| || ||||| || || || ||||| || || ||||| || Sbjct 2806104 TAAGCACTTCCAGACCGCGGTGAAGTCCTGCTCTCAGGGCGGCGTGCGCGGCGGTGCAGC 2806163 Query 43683 AACGTTGTATTATCCGATCTGGCATTTGGAAGTTGAAAACCTGCTGGTTCTGAAAAACAA 43742 || ||| || || || |||||| ||||||| |||| ||||||||| ||||| ||||| Sbjct 2806164 GACCCTGTTCTACCCAATGTGGCATCTGGAAGTGGAAAGCCTGCTGGTGCTGAAGAACAA 2806223 Query 43743 CAAAGGTGTTGAGAATAACCGTATTCGTCACCTGGATTATGGCGTTCAGCTTAACGATTT 43802 | || ||||| ||||| | ||||| |||| || ||||| ||||| ||| | | Sbjct 2806224 CCGCGGCGTTGAAGGCAACCGCGTGCGTCATATGGACTACGGCGTGCAGCTGAACAAGCT 2806283 Query 43803 GATGTATAAGCGTTTAATCAATAACGATTACATCACACTGTTCAGCC---CTGACGTTGC 43859 ||||||| |||| | | || || | || || |||||||||| | |||| ||| Sbjct 2806284 GATGTATCAGCGCCTGCTGAAGGGTGAAGAGATTACTCTGTTCAGCCCGTCCGACG-TGC 2806342 Query 43860 AAATGATCGCCTGTATGATGCTTTCTATCAAGCTGATCAGACTGAGTTCGAAGAACTCTA 43919 | || ||||||| || |||| || || |||||| |||||| || || || Sbjct 2806343 -----CTGGCTTGTATGACGCGTTCT-TC--GCCGATCAGGATGAGTTTGAGCGCCTGTA 2806394 Query 43920 TACCAGTTTGGAAAAAGACCCAACGGTACGCAAGAAACGTATTAAAGCAGCAGATTTGTT 43979 |||| | || |||||| | | |||||| | || | || || | |||| |||| Sbjct 2806395 CACCAAATACGAGAAAGACGACAGCATCCGCAAGCAGCGCGTGAAGGCGGTAGATCTGTT 2806454 Query 43980 CCAGTTGCTTGTTCAGGAACGCGCACAGACCGGACGCAAATATATTTTCAACAGTCACCA 44039 | | || | | ||||||||||| ||||| || | || ||| ||| | |||| Sbjct 2806455 CTCGCTGATGATGCAGGAACGCGCCTCTACCGGCCGTATCTACATTCAGAACGTTGACCA 2806514 Query 44040 CGTCAAC 44046 | |||| Sbjct 2806515 CTGCAAC 2806521 Score = 116 bits (128), Expect = 4e-21 Identities = 190/274 (69%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 42285 CTGAAAACCACACCAGACGATCGCGGGATCATCGTTTCCGCATGGAACCCTGTTGATCTG 42344 ||||||| | || ||| ||| | ||||||||||| ||||||||| | || ||| Sbjct 3442488 CTGAAAAGCGACCCGGACTCGCGCCGCATCATCGTTTCTGCATGGAACGTCGGCGAACTG 3442429 Query 42345 GATAAAATGGCATTGCGTCCGTGTCACTGTTTCTTCCAGTTCGTCGTAATCAACGGTAAA 42404 ||| | ||||| || ||||| ||| |||||||||||| ||| |||| || Sbjct 3442428 GATGAGATGGCGCTGGCCCCGTGCCACGCGTTCTTCCAGTTCTACGTTGCGGACGGCAAG 3442369 Query 42405 CTGTCTCTACAGTGGTATCAGCGTTCGGTTGATGTCTTCTTAGGGTTGCCGTTCAATATC 42464 || || || ||||||||| || ||| ||||| | || |||||||||||||| Sbjct 3442368 CTCTCCTGCCAACTGTATCAGCGCTCCTGCGATATCTTCCTCGGCCTGCCGTTCAATATC 3442309 Query 42465 GCCTCCTACGCTCTCCTGACGCATATTATCGCTGATATTTGCGGGTACGAAGTAGGTGAT 42524 ||| ||||||| | ||| |||||| || || | |||| ||||| |||||| Sbjct 3442308 GCCAGCTACGCTTTGCTGGTGCATATGATGGCCCAGCAGTGCGACCTGGAAGTGGGTGAT 3442249 Query 42525 CTGGTTTGGACAGGTGGTGATGTCCATATCTACA 42558 | || ||||| ||||| ||| |||| | |||| Sbjct 3442248 TTTGTCTGGACCGGTGGCGATACCCATCTGTACA 3442215 Score = 105 bits (116), Expect = 8e-18 Identities = 157/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 45193 GAAAAACAACTGTCATTCTTCTGGCGACCGGAAGAAGTGGATCTGTCGATCGACCGTATG 45252 ||||| || || || ||||||||||| |||||||||||||| | ||| ||| ||||| Sbjct 2807759 GAAAAGCAGCTCTCTTTCTTCTGGCGCCCGGAAGAAGTGGACGTCTCGCGCGATCGTATT 2807818 Query 45253 CAGTATGCAAAAATGCCGGAACACGAGAAAATCATTTTTGATTCTAACCTGCAATATCAA 45312 | ||| |||| || ||||| ||| ||| ||| |||||| | ||||| Sbjct 2807819 GACTATCAGGCGCTGCCAGAGCACGAAAAACACATCTTTATCAGCAACCTGAAGTATCAG 2807878 Query 45313 ACCCTGTTAGATACCATTCAGGGACGTGGCCCTAACCTGGCGTTTCTCCCGATTGCCTCT 45372 || ||| | || | ||||||||||| |||| ||| ||||||| || ||| | ||| Sbjct 2807879 ACTCTGCTGGACTCTATTCAGGGACGCAGCCCGAACGTGGCGTTGCTGCCGCTGATCTC- 2807937 Query 45373 GATGTTTCAA-TGGAAACGTGGATCGAAACATGGGCTTTC 45411 ||| || ||||||| ||||| ||||| ||||| ||| Sbjct 2807938 GATCCCGGAACTGGAAACCTGGATTGAAACCTGGGCGTTC 2807977 Score = 96.9 bits (106), Expect = 4e-15 Identities = 243/365 (67%), Gaps = 6/365 (2%) Strand=Plus/Plus Query 155821 CAACGAGAACGCGAACAAAGAC-GCAAGGGTTTTCCCGACACAGCGCGATCTGTTGGCGG 155879 ||| || || || || || || |||||| | |||| || |||||||||||| |||| | Sbjct 3819927 CAATGAAAATGCCAATAAGGATAGCAAGG-TGATCCCCACTCAGCGCGATCTGCTGGCCG 3819985 Query 155880 GTATCGTAGCGAAACACTTCGCACGTAACCACATTCTACCAAAACACATCGTAGAAGCGC 155939 | ||||| || ||||||| ||| ||| | || || || || | | || || | Sbjct 3819986 GGATCGTCGCCAAACACTACGCCCGTCAGCATATGCTGCCGCGTGATGTGGTCAGCGCCC 3820045 Query 155940 ATGATTCTGGTGATATCCATTATCATGATCTGGATTACAGCCCGTTCACGCCATACACAA 155999 |||| || || ||||| ||||| ||||| || ||| ||||| || | Sbjct 3820046 ATGAGCGCGGCGAGATCCACTATCACGATCTCGACTACTCGCCGTTTTTCCCGATGTTTA 3820105 Query 156000 ACTGCTGTCTGGTGGATTTGAAAGGTATGCTGGCTAATGGCTTCAAGATGGGTAACGCAG 156059 ||||| ||| | || || || |||||| | | |||||||| ||||||||||| | Sbjct 3820106 ACTGCATGCTGATCGACCTGCGGGGCATGCTGACGCACGGCTTCAAAATGGGTAACGCCG 3820165 Query 156060 ACATCGAACCCCCGAAATCAATCGGTGTTGCGACTGCTCTTATGGCACAGATCACCGCAC 156119 | |||||||| || || || ||| || || || | | || ||||||| ||| | Sbjct 3820166 AGATCGAACCGCCTAAGTCGATCTCCACCGCCACCGCCGTCACCGCGCAGATCATCGCCC 3820225 Query 156120 AGATTGCTTCTCACCAGTACGGCGGGACAACCTTTGCAAACG--TGGATAAAGTGCTGGC 156177 || | || || ||||| || || ||| || || || | ||| |||||||||| Sbjct 3820226 AGGTCGCCAGCCATATTTACGGGGGCACCACCATT--AACCGTATTGATGAAGTGCTGGC 3820283 Query 156178 TCCGT 156182 |||| Sbjct 3820284 GCCGT 3820288 >seq83 Length=912621 Score = 201 bits (222), Expect = 1e-46 Identities = 301/426 (71%), Gaps = 6/426 (1%) Strand=Plus/Plus Query 43393 TCGTTACCTACGCCTATTATGGCTGGTGTGCGTACTCCTACGCGTCAGTTTTCCAGTTGC 43452 || ||||||||||| || |||||||| || || || || || || || || | ||| Sbjct 579776 TCCTTACCTACGCCAATCATGGCTGGGGTACGGACGCCGACTCGCCAATTCAGCTCATGC 579835 Query 43453 GTAGTGATTGAATCAGGTGATTCACTGGGTTCTCTGAATGCTGTAACCTCT---GCGATC 43509 || | || || | || ||| | | ||| | || || || ||| || ||| Sbjct 579836 GTGCTTATCGAGTGTGGCGATAGCTTAGACTCTATCAACGCC---ACTTCTAGTGCTATC 579892 Query 43510 GTGAAGTATATTTCACAACGCGCGGGTATCGGTGTTAATGCTGGACACATTCGCGCAATG 43569 || || || ||||||||||||| || |||||| | |||||||| | ||||| || | Sbjct 579893 GTTAAATACGTTTCACAACGCGCAGGGATCGGTATCAATGCTGGCCGTATTCGTGCGCTA 579952 Query 43570 GGTTCTAAAATCCGTGGTGGTGAAGCAGTACATACAGGCGTGATCCCGTTCTGGAAACAT 43629 || |||||||||||||||||| | ||||| || |||||||||| ||||| Sbjct 579953 GGCAGCCCAATCCGTGGTGGTGAAGCTTTCCATACCGGTTGTATCCCGTTCTACAAACAC 580012 Query 43630 ATTCAGACAGCGGTTAAATCCTGTTCACAAGGTGGCGTTCGTGGTGGTGCTGCAACGTTG 43689 | ||||| || || ||||| || || ||||| ||||| || || ||||| || || || Sbjct 580013 TTCCAGACGGCCGTGAAATCTTGCTCGCAAGGCGGCGTACGCGGGGGTGCCGCGACACTG 580072 Query 43690 TATTATCCGATCTGGCATTTGGAAGTTGAAAACCTGCTGGTTCTGAAAAACAACAAAGGT 43749 | ||| || || ||||| |||||| |||||| | | | || |||||||| ||| ||| Sbjct 580073 TTTTACCCTATGTGGCACTTGGAAATTGAAAGCTTATTAGTCCTGAAAAATAACCGTGGT 580132 Query 43750 GTTGAGAATAACCGTATTCGTCACCTGGATTATGGCGTTCAGCTTAACGATTTGATGTAT 43809 ||||| ||||||| | |||||||| ||||| ||||| || | ||| | | |||||| Sbjct 580133 GTTGAAGGTAACCGTGTCCGTCACCTAGATTACGGCGTACAAATCAACAAACTCATGTAT 580192 Query 43810 AAGCGT 43815 | ||| Sbjct 580193 CAACGT 580198 Score = 116 bits (128), Expect = 4e-21 Identities = 295/441 (67%), Gaps = 17/441 (4%) Strand=Plus/Plus Query 44557 GATTGGGAATGGTTGCGCGGCGAAATCAAAAAATATGGCTTGCGTAACTCAACTCTTTCC 44616 ||||||||| | || || | |||||||| | | ||||||| ||||||||||| ||||| Sbjct 580952 GATTGGGAAAGCTTACGTGAAGAAATCAAGACACATGGCTTACGTAACTCAACGCTTTCA 581011 Query 44617 GCTTTAATGCCATGTGAGAGTAGTTCTCAAGTAAGCAACTCAACAAACGGGATTGAACCG 44676 || || ||||||| || | ||| || | || | |||||||| || || || Sbjct 581012 GCATTGATGCCATCAGAAACCTCTTCGCAGATTTCTAATGCTACAAACGGTATCGAGCCT 581071 Query 44677 CCTCGCGGTCCTGTGAGTGTGAAATCTTCGAAAGAAGGTTCATTCAAC--CAGGTAGTAC 44734 || ||||| ||| ||| | ||| | |||||||| ||| ||| || ||||| || | Sbjct 581072 CCACGCGGCTATGTCAGTATCAAAGCCTCGAAAGACGGT--ATTTTACGTCAGGTCGTTC 581129 Query 44735 C-GAACCAGAACGATCAGATTGATTTCTATGATTATCTCTGGACAATGGCAAAACGCGGT 44793 | || || || | | | ||| ||||| || ||| |||| | | Sbjct 581130 CAGAGTATGAGCGCTTACA-AGATCAGTATGAGCTGCTATGGGAAATG------CCTTCT 581182 Query 44794 AATAAAGGTTATCTGTCTCATGTTGCTGTTATGCAGAAGTTTGTTGATCAAGCGATCTCT 44853 || | ||||| | | ||| | |||||||||||||||| || ||||| |||||| Sbjct 581183 AACGATGGTTACTTACAACTTGTCGGGATTATGCAGAAGTTTGTCGACCAAGCTATCTCT 581242 Query 44854 GCAAACACCAACTATGATCCGGCTAACTTCCCAGATGGTAAAGTGAAATCTGAAACCATC 44913 ||||||||||||| |||||| | | | | | || ||||| | || | | | Sbjct 581243 TCAAACACCAACTACGATCCGACACGTTACACTGGCGGGAAAGT-ACCGATGCAGCAGTT 581301 Query 44914 ATTG-ATGACCTGCTTTATGCGAACTACTACGGCGTGAAAACTCTGTATTATCACAACAC 44972 | || | |||||||| ||| | | | |||||||||||| || || ||||| ||||| Sbjct 581302 ACTGAAAGACCTGCTGACCGCGTATAAATTCGGCGTGAAAACGCTTTACTATCAAAACAC 581361 Query 44973 CCGCGACGGTGCAGGTGAAGA 44993 || || ||||| |||||| Sbjct 581362 GCGTGATGGTGC---TGAAGA 581379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576527661556920