Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_031065.1 Length=159878 Score E Sequences producing significant alignments: (Bits) Value seq83 161 1e-34 seq122 109 6e-19 >seq83 Length=912621 Score = 161 bits (178), Expect = 1e-34 Identities = 320/469 (68%), Gaps = 5/469 (1%) Strand=Plus/Minus Query 132554 TTTTACCAAGACGTTCCATCATCAAATCATTGATTTGCAGACCATAATCTAGATGACGAA 132613 |||||||| |||||| ||| | | |||||||| | || |||||||| ||||| | Sbjct 580207 TTTTACCA-GACGTTGATACATGAGTTTGTTGATTTGTACGCCGTAATCTAGGTGACGGA 580149 Query 132614 TACGGTTTTCATCTACACCTTTGTTGTTCTTTAATACAAGCAGGTTTTCAACTTCTAGAT 132673 |||||| | || ||||| ||| || || | || | | | |||||| ||| | | Sbjct 580148 CACGGTTACCTTCAACACCACGGTTATTTTTCAGGACTAATAAGCTTTCAATTTCCAAGT 580089 Query 132674 GCCACATTGGATAATAAAGAGTAGCTGCACCACCACGTACACCGCCTTGAGAACAAGATT 132733 ||||||| || ||| | || || || ||||| || ||||| |||||||| || ||||||| Sbjct 580088 GCCACATAGGGTAAAACAGTGTCGCGGCACCCCCGCGTACGCCGCCTTGCGAGCAAGATT 580029 Query 132734 TTACTGCAGTCTGAAAATGTTTCCAAAAAGGAATTACGCCAGTATGTTTTACTTCGCCAT 132793 | || || ||||| || ||||| | || || || || ||||| |||| ||| Sbjct 580028 TCACGGCCGTCTGGAAGTGTTTGTAGAACGGGATACAACCGGTATGGAAAGCTTCACCAC 579969 Query 132794 TACCAATTTTTGAGCCTTCAGCTCGAATCATACCGGCGTTGATGCCTATACCAGCTCGCT 132853 || ||| |||| || ||||| || || ||||| || || || || || | Sbjct 579968 CACGGATTGGGCTGCCTAGCGCACGAATACGGCCAGCATTGATACCGATCCCTGCGCG-T 579910 Query 132854 TGCTGATA--TACTTAATAATACTGTTACTTGCCGCATTAATAGAATTCAGTGAATCGCC 132911 || ||| | || |||| ||| || | || || ||||| | | |||||| Sbjct 579909 TG-TGAAACGTATTTAACGATAGCACTAGAAGTGGCGTTGATAGAGTCTAAGCTATCGCC 579851 Query 132912 AGCTTCGATAACTACACAAGAACTAAATTGACGAGTAGGAGTACGAGCCCCCGCCATAAT 132971 | ||||||| || || || || ||||| ||||| || || || |||| ||||| || Sbjct 579850 ACACTCGATAAGCACGCATGAGCTGAATTGGCGAGTCGGCGTCCGTACCCCAGCCATGAT 579791 Query 132972 TGGTGTAGGTAATGAAATCTGTCGAGTAGATACAGCATCATAAAAGCGA 133020 ||| |||||||| ||||| | || || || ||||||||||||||| Sbjct 579790 TGGCGTAGGTAAGGAAATTTTAAAGGTCGACACGGCATCATAAAAGCGA 579742 >seq122 Length=4874392 Score = 109 bits (120), Expect = 6e-19 Identities = 266/403 (66%), Gaps = 0/403 (0%) Strand=Plus/Minus Query 132589 TGCAGACCATAATCTAGATGACGAATACGGTTTTCATCTACACCTTTGTTGTTCTTTAAT 132648 |||| || || || | |||||| | ||||| | || || || ||||||||| | Sbjct 2806271 TGCACGCCGTAGTCCATATGACGCACGCGGTTGCCTTCAACGCCGCGGTTGTTCTTCAGC 2806212 Query 132649 ACAAGCAGGTTTTCAACTTCTAGATGCCACATTGGATAATAAAGAGTAGCTGCACCACCA 132708 || |||||| |||| ||||| |||||||||||||| || | || || |||||||| || Sbjct 2806211 ACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAACAGGGTCGCTGCACCGCCG 2806152 Query 132709 CGTACACCGCCTTGAGAACAAGATTTTACTGCAGTCTGAAAATGTTTCCAAAAAGGAATT 132768 || || ||||| ||||| || || || || || ||||| || || || | || ||||| Sbjct 2806151 CGCACGCCGCCCTGAGAGCAGGACTTCACCGCGGTCTGGAAGTGCTTATAGAACGGAATG 2806092 Query 132769 ACGCCAGTATGTTTTACTTCGCCATTACCAATTTTTGAGCCTTCAGCTCGAATCATACCG 132828 ||| || || | |||| || | || ||| || || || |||| Sbjct 2806091 CAGCCGGTGTGGAATGCTTCACCGCCGCGGATCGGGCTGCCCAGCGCACGGATGCGACCG 2806032 Query 132829 GCGTTGATGCCTATACCAGCTCGCTTGCTGATATACTTAATAATACTGTTACTTGCCGCA 132888 ||||| ||||| ||||| || |||| | ||||| | ||| | | | || Sbjct 2806031 GCGTTAATGCCGATACCGGCACGCTGAGAAACGTACTTCACAATCGCGCTGGAGGTGGCG 2805972 Query 132889 TTAATAGAATTCAGTGAATCGCCAGCTTCGATAACTACACAAGAACTAAATTGACGAGTA 132948 ||||| |||| || ||||| || || | ||| || || || || || || || Sbjct 2805971 TTAATGGAATCAAGGCTGTCGCCGCACTCAATCAGTACGCAGGAGCTGAACTGGCGCGTC 2805912 Query 132949 GGAGTACGAGCCCCCGCCATAATTGGTGTAGGTAATGAAATCT 132991 || || || | || | ||||||||| || || | ||||||| Sbjct 2805911 GGGGTGCGCACGCCGGACATAATTGGCGTCGGCAGCGAAATCT 2805869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511441557384240