Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_031074.1 Length=92580 Score E Sequences producing significant alignments: (Bits) Value seq122 205 5e-48 >seq122 Length=4874392 Score = 205 bits (226), Expect = 5e-48 Identities = 515/771 (67%), Gaps = 25/771 (3%) Strand=Plus/Minus Query 821 GGCAAGTCGAAGGATGATCGCACCGGCACCGGCACGCTGAGCAAGTTCGGCGCCCAGCTG 880 |||| | | || |||| |||||||| |||||||||||| | || || ||| || Sbjct 3442800 GGCACGCCCAAAAATGACCGCACCGGAACCGGCACGCTGTCGATTTTTGGTCATCAGATG 3442741 Query 881 CGGTACGACCTCACCGAGGGCTTCCCGCTGGTCACCACGAAGCGCGTCCACTTCAAATCG 940 || | | | || || || || |||||||||||||| ||| ||| || || Sbjct 3442740 CGTTTCAATCTGCAGGACGGTTTTCCGCTGGTCACCACCAAGAAGTGCCATTTGCGCTCT 3442681 Query 941 GTTGCGTACGAACTTCTGTGGTTCCTCAGTGGCGACACGAACGTGAAGGCGCTCAACGAC 1000 | | || || ||||||||||| | || ||||| ||| | || || || Sbjct 3442680 ATCATTCATGAGCTGCTGTGGTTCCTTAACGGTGACACCAACATCGCCTACCTGAAGGAA 3442621 Query 1001 AACGGCGTCACCATCTGGGACGAGTGGGCCGACGCCGGCGGAAACCTCGGTCCTGTCTAC 1060 || || | |||||||||||||||||||| | || ||||||| || || || Sbjct 3442620 AATAAGGTGTCGATCTGGGACGAGTGGGCCGATGAAAAGGGTGACCTCGGGCCGGTTTAT 3442561 Query 1061 GGCGCGCAGTGGCGGCACTGGCATGTCGAGGACGGAGGATCGTCGTG-GATTGACCAGAT 1119 ||| |||||||| |||| || | | |||| | || ||| |||||| | Sbjct 3442560 GGCAAACAGTGGCGCAGCTGGG-------GGGCAGCGGATGGGCGCCAGATCGACCAGCT 3442508 Query 1120 ---CTCGGCCGCCGTGGAGCTGCTTCGCGAGGACCCTGACTCGCGCCGGAACGTGGTATC 1176 | || | || ||||| |||| ||| ||||||||||| | | | || || Sbjct 3442507 GAGCAAGGTGGTCGAACAGCTGAAAAGCGA---CCCGGACTCGCGCCGCATCATCGTTTC 3442451 Query 1177 CGCATGGAACGTCGGTGACCTCAGCGACATGGCACTTCACCCGTGCCACATCATGTTCCA 1236 |||||||||||||| || || || ||||| || |||||||||| | ||||| Sbjct 3442450 TGCATGGAACGTCGGCGAACTGGATGAGATGGCGCTGGCCCCGTGCCACGCGTTCTTCCA 3442391 Query 1237 GCTGTACGTCGTCGACGGCCGGCTCTCGCTGC-AGGTCTACCAGCGCAGCGCGGACATGT 1295 | | ||||| | |||||| |||||| |||| | | || |||||| | || || | Sbjct 3442390 GTTCTACGTTGCGGACGGCAAGCTCTC-CTGCCAACTGTATCAGCGCTCCTGCGATATCT 3442332 Query 1296 TCCTCGGTGTGCCGTTCAATATCGCCTCGTACGCGCTCCTCGCGCACATGTTCGCGCAGC 1355 ||||||| ||||||||||||||||| ||||| | || | ||| ||| | || |||| Sbjct 3442331 TCCTCGGCCTGCCGTTCAATATCGCCAGCTACGCTTTGCTGGTGCATATGATGGCCCAGC 3442272 Query 1356 AGGCCGGCCTGCGGGTGGGTGAGCTGATCTGGACCGGCGGCGACTGCCACATCTACAACA 1415 || || |||| |||||||| | |||||||||| ||||| ||| | |||| || Sbjct 3442271 AGTGCGACCTGGAAGTGGGTGATTTTGTCTGGACCGGTGGCGATACCCATCTGTACAGCA 3442212 Query 1416 ACCACGTCGACCAGGCGCTGATGCAGCT-CCGC-CGACGACCGCG-GCCCTACCCGAGGC 1472 ||||| | || ||| ||| ||||||| ||| ||| |||||| ||||| |||| || Sbjct 3442211 ACCACCTGGAGCAGACGCGCCTGCAGCTGACGCGCGA--ACCGCGCGCCCT-GCCGAAGC 3442155 Query 1473 TCGTGCTACACCACGCGCC---GTCGATCTTCGACTACCGGTACGAGCACATCCACCTCG 1529 | | | | | | ||| ||| ||||||||||| || | || || || | ||| Sbjct 3442154 TGATTATCAAGCGCAAGCCGGAGTCTATCTTCGACTATCGCTTTGATGACTTCGAGATCG 3442095 Query 1530 TGAACTACGACCCGCACCCGTCGATCAAGGCGCCGGTGGCCGTCTGATGGG 1580 ||||||||||| ||| | || || || ||||| ||| |||||| || Sbjct 3442094 AAGGTTACGACCCGCATCCGGCCATTAAAGCCCCGGTCGCCATCTGATCGG 3442044 Score = 132 bits (146), Expect = 3e-26 Identities = 202/282 (72%), Gaps = 8/282 (3%) Strand=Plus/Minus Query 3426 TTCGGCTCCACGGTCAATGAGGCAGGG--TTCCGCGAGCTCGACCCGCACGTGGGTGTGA 3483 |||||| ||||||||||| ||||| | | | ||| ||||||||||||||| ||| Sbjct 3983531 TTCGGCGGCACGGTCAATGC--CAGGGGCTACAAGGTGCTGGACCCGCACGTGGGTCTGA 3983474 Query 3484 TCTACGGCGATTCGATCACCCTGAATCGGGCGGCGTCGATCACCGGTCGGCTCGCTGAGA 3543 |||||||||| ||||| ||||| | || || |||| |||| || | | | Sbjct 3983473 TCTACGGCGACTCGATTACCCTCGAGCGTGCCAATCAGATCCTGAGTCGTCTGGAGGCCA 3983414 Query 3544 TGGGTTACGCGTCCACGAACGTCGTTTTCGGCGTCGGCTCGTACACGTACCAGTACAACA 3603 || | || || || || || ||||||||||| || || |||||||||||||||| Sbjct 3983413 AAGGCTTTGCCAGCAGCAATGTGGTGTTCGGCGTCGGGTCTTATACGTACCAGTACAACA 3983354 Query 3604 CCCGGGACACGTTCGGCAGCGCCATGAAGGCCACGTGGGCCGAGGTGGACGGTGA-GGGC 3662 | || ||||| || || ||||||||| || |||| | ||| ||| |||| || |||| Sbjct 3983353 CGCGTGACACCTTTGGTTTCGCCATGAAAGCGACGTATGGCGAAGTGCACGGAGAGGGGC 3983294 Query 3663 GTGA-ACCTGCTCAAGGACCCGATCACCGACGACGGAACGAA 3703 |||| | || |||| | |||| |||||| |||| | ||| Sbjct 3983293 GTGAGATCT--TCAAACAGCCGAAAACCGACAACGGCATGAA 3983254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 296108596212963