Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_031085.1 Length=166634 Score E Sequences producing significant alignments: (Bits) Value seq122 183 3e-41 seq83 138 1e-27 >seq122 Length=4874392 Score = 183 bits (202), Expect = 3e-41 Identities = 146/176 (83%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 62752 CTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAG 62811 || |||||||||||||| | || ||||| ||||||||||| || |||| ||||||||| Sbjct 3215644 CTTTCAGTAAAGGTACGCGTAATCACGTCACGCTGCTGTTCTGGCGTCAAAGAGTTAAAA 3215703 Query 62812 CGAACTGCATATCCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACT 62871 || || ||||| ||||| || || |||||||||||||||||||| ||||| ||||| || Sbjct 3215704 CGCACGGCATAACCGGAAACGCGAATGGTCAGCTGCGGATATTTCTCCGGGTGCTTCACC 3215763 Query 62872 GCATCTTCCAGAGTTTCACGACGCAGAACGTTTACGTTCAGGTGTTGACCACCTTC 62927 || |||||||| |||||||| | ||| ||||| |||||||| || ||||| || || Sbjct 3215764 GCCTCTTCCAGCGTTTCACGGCTCAGGACGTTGACGTTCAGATGCTGACCGCCCTC 3215819 Score = 123 bits (136), Expect = 3e-23 Identities = 139/186 (75%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 62745 TTACAAACTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGA 62804 ||||| |||| ||| |||||||| | ||| || || |||||||||| |||||| || Sbjct 1181308 TTACATGCTCTGAGTGAAGGTACGGGTGATCACATCCTGCTGCTGTTCTTTAGTCAGCGA 1181367 Query 62805 GTTAAAGCGAACTGCATATCCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATG 62864 ||| || || || ||||| || || || || ||||| | |||||||||||||||||| | Sbjct 1181368 GTTGAAACGTACCGCATAGCCCGACACGCGAATGGTTAACTGCGGATATTTTTCCGGGTC 1181427 Query 62865 CTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTTACGTTCAGGTGTTGACCACC 62924 | | || || ||| ||||||| || ||||| ||||| ||||| ||||| || Sbjct 1181428 TTCCATCGCTTCCAGCAGCATTTCACGGTTCATCACGTTGACGTTGAGGTGCTGACCCCC 1181487 Query 62925 TTCAAT 62930 |||||| Sbjct 1181488 TTCAAT 1181493 Score = 86.0 bits (94), Expect = 7e-12 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 140479 TTCAGTTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACACCTTTGTTATTT 140538 ||||| || || || || ||||||||||| | |||||| |||| || || ||| || Sbjct 2806277 TTCAGCTGCACGCCGTAGTCCATATGACGCACGCGGTTGCCTTCAACGCCGCGGTTGTTC 2806218 Query 140539 TTCAAAACAAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCG 140598 |||| || || || |||| ||||||| |||||| || || || | || || || Sbjct 2806217 TTCAGCACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAACAGGGTCGCTGCA 2806158 Query 140599 CCGCCACGAATTCCACCTTGTGAGCATGATTTAACAGCAGTCTGAAAATGTTTCCAAAAA 140658 ||||| || | || || || ||||| || || || || ||||| || || || | || Sbjct 2806157 CCGCCGCGCACGCCGCCCTGAGAGCAGGACTTCACCGCGGTCTGGAAGTGCTTATAGAAC 2806098 Query 140659 GGAAT 140663 ||||| Sbjct 2806097 GGAAT 2806093 Score = 82.4 bits (90), Expect = 8e-11 Identities = 89/114 (78%), Gaps = 3/114 (3%) Strand=Plus/Minus Query 70561 AAATTTGGCGGA-CATGCATGGATTCGAACCATGGACCAATTGATTAACAGTCAACTGCT 70619 || ||||| || | |||| ||||||||||| |||||||||||||| ||||||||||| Sbjct 980280 AAGTTTGGTGGGTCGTGCA-GGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCT 980222 Query 70620 CTACC-ACTGAGCTACACATCCAAATTGGTGGGGAGTGATGGAGTCGAACCACC 70672 ||||| ||||||||| | || | ||||||| ||| || ||||||| || Sbjct 980221 CTACCAACTGAGCTAACGACCCGATATGGTGGGTGATGACGGGCTCGAACCGCC 980168 Score = 82.4 bits (90), Expect = 8e-11 Identities = 79/99 (80%), Gaps = 2/99 (2%) Strand=Plus/Minus Query 70575 TGCATGGATTCGAACCATGGACCAATTGATTAACAGTCAACTGCTCTACC-ACTGAGCTA 70633 |||| ||||||||||| |||||||||||||| |||||||||||||||| ||||||||| Sbjct 980574 TGCA-GGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTA 980516 Query 70634 CACATCCAAATTGGTGGGGAGTGATGGAGTCGAACCACC 70672 | || | ||||||| ||| || ||||||| || Sbjct 980515 ACGACCCGATATGGTGGGTGATGACGGGCTCGAACCGCC 980477 Score = 82.4 bits (90), Expect = 8e-11 Identities = 79/99 (80%), Gaps = 2/99 (2%) Strand=Plus/Minus Query 70575 TGCATGGATTCGAACCATGGACCAATTGATTAACAGTCAACTGCTCTACC-ACTGAGCTA 70633 |||| ||||||||||| |||||||||||||| |||||||||||||||| ||||||||| Sbjct 3034727 TGCA-GGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTA 3034669 Query 70634 CACATCCAAATTGGTGGGGAGTGATGGAGTCGAACCACC 70672 | || | ||||||| ||| || ||||||| || Sbjct 3034668 ACGACCCGATATGGTGGGTGATGACGGGCTCGAACCGCC 3034630 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 71077 TTGGAGCGGATAATGAGAATCGAACTCACATCATCAGATTGGAAGTCTGAGGTAAT-GCC 71135 ||||||||| | | ||||||||| | ||||||||| ||||||| |||||||||| ||| Sbjct 4690227 TTGGAGCGGGCAGCGGGAATCGAACCCGCATCATCAGCTTGGAAGGCTGAGGTAATAGCC 4690168 Query 71136 ATTATACGATATCCGCA 71152 |||||||||| ||||| Sbjct 4690167 ATTATACGATGCCCGCA 4690151 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 71077 TTGGAGCGGATAATGAGAATCGAACTCACATCATCAGATTGGAAGTCTGAGGTAAT-GCC 71135 ||||||||| | | ||||||||| | ||||||||| ||||||| |||||||||| ||| Sbjct 4697378 TTGGAGCGGGCAGCGGGAATCGAACCCGCATCATCAGCTTGGAAGGCTGAGGTAATAGCC 4697319 Query 71136 ATTATACGATATCCGCA 71152 |||||||||| ||||| Sbjct 4697318 ATTATACGATGCCCGCA 4697302 >seq83 Length=912621 Score = 138 bits (152), Expect = 1e-27 Identities = 292/433 (67%), Gaps = 2/433 (0%) Strand=Plus/Minus Query 140484 TTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACACCTTTGTTATTTTTCAA 140543 ||| || || ||||| | ||||| | ||||| |||| ||||| ||||||||||| Sbjct 580174 TTGTACGCCGTAATCTAGGTGACGGACACGGTTACCTTCAACACCACGGTTATTTTTCAG 580115 Query 140544 AAC-AAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGC 140602 || || ||| |||||| |||||| ||||| ||||| ||| | || || || || | Sbjct 580114 GACTAATAAG-CTTTCAATTTCCAAGTGCCACATAGGGTAAAACAGTGTCGCGGCACCCC 580056 Query 140603 CACGAATTCCACCTTGTGAGCATGATTTAACAGCAGTCTGAAAATGTTTCCAAAAAGGAA 140662 | || | || ||||| ||||| ||||| || || ||||| || ||||| | || || | Sbjct 580055 CGCGTACGCCGCCTTGCGAGCAAGATTTCACGGCCGTCTGGAAGTGTTTGTAGAACGGGA 579996 Query 140663 TAACACCAGTATGACGTACTTCACCCATGCCAATCTTAGAACCTTCGGCACGAATCATAC 140722 || ||| ||||| ||||||| | || ||| |||||||| | Sbjct 579995 TACAACCGGTATGGAAAGCTTCACCACCACGGATTGGGCTGCCTAGCGCACGAATACGGC 579936 Query 140723 CAACGTTAATACCAATTCCAGCGCGTTTAGAGATATATTCAACAATTGAAGCGGAAGCCT 140782 || | || ||||| || || ||||||| || | |||| ||| || | | |||| Sbjct 579935 CAGCATTGATACCGATCCCTGCGCGTTGTGAAACGTATTTAACGATAGCACTAGAAGTGG 579876 Query 140783 TATTGATAGACTTTAATGAATCACCTGCCTCAATAACAACACATGAACTAAACTGTCGAG 140842 |||||||| | ||| ||| || ||| |||| || ||||| || || || |||| Sbjct 579875 CGTTGATAGAGTCTAAGCTATCGCCACACTCGATAAGCACGCATGAGCTGAATTGGCGAG 579816 Query 140843 TCGGAGTACGACAACCAGCCATAATAGGAGTTGGTAATGAAATCTGTCGAGTAGATACTG 140902 |||| || || |||||||| || || || ||||| ||||| | || || || | Sbjct 579815 TCGGCGTCCGTACCCCAGCCATGATTGGCGTAGGTAAGGAAATTTTAAAGGTCGACACGG 579756 Query 140903 CTTCATAAAAACG 140915 | |||||||| || Sbjct 579755 CATCATAAAAGCG 579743 Score = 95.1 bits (104), Expect = 1e-14 Identities = 91/113 (81%), Gaps = 3/113 (3%) Strand=Plus/Minus Query 70562 AATTTGGCGGA-CATGCATGGATTCGAACCATGGACCAATTGATTAACAGTCAACTGCTC 70620 ||||||| || | |||| ||||||||||| |||||||||||||| |||||||||||| Sbjct 700985 AATTTGGTGGGTCGTGCA-GGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTC 700927 Query 70621 TACC-ACTGAGCTACACATCCAAATTGGTGGGGAGTGATGGAGTCGAACCACC 70672 |||| ||||||||| | || || ||||||| ||| ||| ||||||| || Sbjct 700926 TACCAACTGAGCTAACGACCCGAAGTGGTGGGTGATGACGGATTCGAACCGCC 700874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 533059064871120