Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_031087.1 Length=168272 Score E Sequences producing significant alignments: (Bits) Value seq122 201 1e-46 seq83 196 5e-45 >seq122 Length=4874392 Score = 201 bits (222), Expect = 1e-46 Identities = 346/500 (69%), Gaps = 2/500 (0%) Strand=Plus/Minus Query 141201 GGACTAAACAGAGTGATGTAATCATTCTTAATCAAACGTTCAATCATCAGGTTATTAATC 141260 || || |||||||| || | ||| ||| | || || | | |||||| || || | | Sbjct 2806331 GGGCTGAACAGAGTAATCTCTTCACCCTTCAGCAGGCGCTGATACATCAGCTTGTTCAGC 2806272 Query 141261 TGAACGCCATAATCTAAATGACGAATACGGTTTTCATCTACACCTTTGTTGTTCTTAAGT 141320 || ||||| || || | |||||| | ||||| | || || || ||||||||| || Sbjct 2806271 TGCACGCCGTAGTCCATATGACGCACGCGGTTGCCTTCAACGCCGCGGTTGTTCTTCAGC 2806212 Query 141321 ACGAGGAGGTTTTCAACTTCCAAGTGCCAGATTGGATAGTACAGTGTCGCCGCGCCACCA 141380 || || ||| |||| ||||||| ||||| ||||| ||| |||| ||||| || || || Sbjct 2806211 ACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAACAGGGTCGCTGCACCGCCG 2806152 Query 141381 CGGACTCCACCTTGGGAGCAGGATTTAACTGCTGTTTGGAAGTGTTTCCAGAAAGGAATA 141440 || || || || || |||||||| || || || || |||||||| || |||| ||||| Sbjct 2806151 CGCACGCCGCCCTGAGAGCAGGACTTCACCGCGGTCTGGAAGTGCTTATAGAACGGAATG 2806092 Query 141441 ACTCCAGTATGTTTGACTTCACCGAATCCAATTTTTGAACCCTCGGCGCGAATCATGCCT 141500 || || || |||||||| | || ||| || || || || Sbjct 2806091 CAGCCGGTGTGGAATGCTTCACCGCCGCGGATCGGGCTGCCCAGCGCACGGATGCGACCG 2806032 Query 141501 GCATTAATACCAATACCTGCACGCTTACTGATGTATTTCGTAATTGATGCAGCAGCTT-C 141559 || ||||| || ||||| ||||||| | | ||| ||| ||| | || | || | | Sbjct 2806031 GCGTTAATGCCGATACCGGCACGCTGAGAAACGTACTTCACAATCGC-GCTGGAGGTGGC 2805973 Query 141560 GTTAATTGAATTAAGACTATCACCACCTTCAATAACCACGCATGAACTGAACTGGCGTGT 141619 |||||| |||| ||| || || || | ||||| | ||||| || ||||||||||| || Sbjct 2805972 GTTAATGGAATCAAGGCTGTCGCCGCACTCAATCAGTACGCAGGAGCTGAACTGGCGCGT 2805913 Query 141620 CGGAGTACGAACACCAGACATAATTGGTGTTGGCAATGAAATCTTTTTAGTAGAAACTGC 141679 ||| || || || || ||||||||||| || |||| |||||||| || || | || Sbjct 2805912 CGGGGTGCGCACGCCGGACATAATTGGCGTCGGCAGCGAAATCTTAAAGGTGGAGATCGC 2805853 Query 141680 ATCATAGAAACGAATAACGT 141699 ||| |||||||| | |||| Sbjct 2805852 ATCGTAGAAACGCTTGACGT 2805833 Score = 159 bits (176), Expect = 4e-34 Identities = 139/173 (80%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 60000 TCTGTGAAAGTACGGGCGATAACGTCGCGCTGCTGTTCTGGTGTCAGGGAGTTAAAGCGC 60059 || || || ||||| | || ||||| |||||||||||||| |||| |||||||| ||| Sbjct 3215647 TCAGTAAAGGTACGCGTAATCACGTCACGCTGCTGTTCTGGCGTCAAAGAGTTAAAACGC 3215706 Query 60060 ACCGCGTAGCCGGAAACACGAATGGTAAGCTGCGGGTATTTTTCCGGATGCTCAACCGCG 60119 || || || |||||||| |||||||| |||||||| ||||| ||||| |||| ||||| Sbjct 3215707 ACGGCATAACCGGAAACGCGAATGGTCAGCTGCGGATATTTCTCCGGGTGCTTCACCGCC 3215766 Query 60120 TCCAGCAGAGTTTCGCGACGCAGCACGTTAACGTTCAGGTGCTGACCGCCTTC 60172 || ||| ||||| || | ||| ||||| |||||||| ||||||||||| || Sbjct 3215767 TCTTCCAGCGTTTCACGGCTCAGGACGTTGACGTTCAGATGCTGACCGCCCTC 3215819 Score = 150 bits (166), Expect = 2e-31 Identities = 137/173 (79%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 60003 GTGAAAGTACGGGCGATAACGTCGCGCTGCTGTTCTGGTGTCAGGGAGTTAAAGCGCACC 60062 ||||| ||||||| ||| || || ||||||||||| ||||| ||||| || || ||| Sbjct 1181321 GTGAAGGTACGGGTGATCACATCCTGCTGCTGTTCTTTAGTCAGCGAGTTGAAACGTACC 1181380 Query 60063 GCGTAGCCGGAAACACGAATGGTAAGCTGCGGGTATTTTTCCGGATGCTCAACCGCGTCC 60122 || ||||| || || |||||||| | |||||| ||||||||||| | || | ||| ||| Sbjct 1181381 GCATAGCCCGACACGCGAATGGTTAACTGCGGATATTTTTCCGGGTCTTCCATCGCTTCC 1181440 Query 60123 AGCAGAGTTTCGCGACGCAGCACGTTAACGTTCAGGTGCTGACCGCCTTCAAT 60175 ||||| |||| || || |||||| ||||| ||||||||||| |||||||| Sbjct 1181441 AGCAGCATTTCACGGTTCATCACGTTGACGTTGAGGTGCTGACCCCCTTCAAT 1181493 >seq83 Length=912621 Score = 196 bits (216), Expect = 5e-45 Identities = 325/464 (70%), Gaps = 8/464 (2%) Strand=Plus/Minus Query 141233 CAAACGTTCAATCATCAGGTTATTAATCTGAACGCCATAATCTAAATGACGAATACGGTT 141292 || ||||| | ||| || || || || || ||||| ||||||| ||||| | |||||| Sbjct 580201 CAGACGTTGATACATGAGTTTGTTGATTTGTACGCCGTAATCTAGGTGACGGACACGGTT 580142 Query 141293 TTCATCTACACCTTTGTTGTTCTTAAGTACGAGGAGGTTTTCAACTTCCAAGTGCCAGAT 141352 | || ||||| ||| || || || || | | | |||||| |||||||||||| || Sbjct 580141 ACCTTCAACACCACGGTTATTTTTCAGGACTAATAAGCTTTCAATTTCCAAGTGCCACAT 580082 Query 141353 TGGATAGTACAGTGTCGCCGCGCCACCACGGACTCCACCTTGGGAGCAGGATTTAACTGC 141412 || || |||||||||| || || || || || || ||||| ||||| ||||| || || Sbjct 580081 AGGGTAAAACAGTGTCGCGGCACCCCCGCGTACGCCGCCTTGCGAGCAAGATTTCACGGC 580022 Query 141413 TGTTTGGAAGTGTTTCCAGAAAGGAATAACTCCAGTATGTTTGACTTCACCGAATCCAAT 141472 || ||||||||||| |||| || ||| || ||||| ||||||| ||| Sbjct 580021 CGTCTGGAAGTGTTTGTAGAACGGGATACAACCGGTATGGAAAGCTTCACC---ACCACG 579965 Query 141473 TTTTGAAC--CCTCG-GCGCGAATCATGCCTGCATTAATACCAATACCTGCACGCTTACT 141529 ||| | ||| | || ||||| ||| ||||| ||||| || ||||| || | Sbjct 579964 GATTGGGCTGCCTAGCGCACGAATACGGCCAGCATTGATACCGATCCCTGCGCGTTGTGA 579905 Query 141530 GATGTATTTCGTAATTGATGCAGCAGCTTCGTTAATTGAAT-TAAGACTATCACCACCTT 141588 | |||||| || | || || |||| || || | |||| ||||| |||| | Sbjct 579904 AACGTATTTAACGATAGCACTAGAAGTGGCGTTGATAGAGTCTAAG-CTATCGCCACACT 579846 Query 141589 CAATAACCACGCATGAACTGAACTGGCGTGTCGGAGTACGAACACCAGACATAATTGGTG 141648 | |||| ||||||||| ||||| ||||| ||||| || || || |||| ||| ||||| | Sbjct 579845 CGATAAGCACGCATGAGCTGAATTGGCGAGTCGGCGTCCGTACCCCAGCCATGATTGGCG 579786 Query 141649 TTGGCAATGAAATCTTTTTAGTAGAAACTGCATCATAGAAACGA 141692 | || || ||||| || || || || |||||||| || ||| Sbjct 579785 TAGGTAAGGAAATTTTAAAGGTCGACACGGCATCATAAAAGCGA 579742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 538300254519360