Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_031090.1 Length=169621 Score E Sequences producing significant alignments: (Bits) Value seq122 181 1e-40 seq83 163 3e-35 >seq122 Length=4874392 Score = 181 bits (200), Expect = 1e-40 Identities = 148/180 (82%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 142541 GGTGGTCAACACCTGAACGTTAATGTTCTGCGTCGTGAAACTCTGGAAGATGCAGTTAAG 142600 || ||||| || |||||||| || || ||| | |||||||| |||||||| || || ||| Sbjct 3215816 GGCGGTCAGCATCTGAACGTCAACGTCCTGAGCCGTGAAACGCTGGAAGAGGCGGTGAAG 3215757 Query 142601 CATCCAGAAAAATATCCGCAGTTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAAC 142660 || || || |||||||||||| ||||||| || || ||||||||||| || || |||||| Sbjct 3215756 CACCCGGAGAAATATCCGCAGCTGACCATTCGCGTTTCCGGTTATGCCGTGCGTTTTAAC 3215697 Query 142661 TCTCTGACTCCGGAACAGCAGCGTGACGTTATCGCTCGTACCTTTACTGAGAGTCTATAA 142720 ||| |||| || ||||||||||||||||| || | |||||||||||||| || || ||| Sbjct 3215696 TCTTTGACGCCAGAACAGCAGCGTGACGTGATTACGCGTACCTTTACTGAAAGCCTTTAA 3215637 Score = 105 bits (116), Expect = 7e-18 Identities = 127/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 142541 GGTGGTCAACACCTGAACGTTAATGTTCTGCGTCGTGAAACTCTGGAAGATGCAGTTAAG 142600 || ||||| ||||| ||||| || || || ||||||| ||| || || | | Sbjct 1181487 GGGGGTCAGCACCTCAACGTCAACGTGATGAACCGTGAAATGCTGCTGGAAGCGATGGAA 1181428 Query 142601 CATCCAGAAAAATATCCGCAGTTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAAC 142660 | || ||||||||||||||||| ||||| || || || || ||||| || || || ||| Sbjct 1181427 GACCCGGAAAAATATCCGCAGTTAACCATTCGCGTGTCGGGCTATGCGGTACGTTTCAAC 1181368 Query 142661 TCTCTGACTCCGGAACAGCAGCGTGACGTTATCGCTCGTACCTTTACTGAGAG 142713 || |||||| |||||||||| || || ||| | |||||||| ||| |||| Sbjct 1181367 TCGCTGACTAAAGAACAGCAGCAGGATGTGATCACCCGTACCTTCACTCAGAG 1181315 Score = 87.8 bits (96), Expect = 2e-12 Identities = 282/429 (66%), Gaps = 8/429 (2%) Strand=Plus/Plus Query 61696 CGTTTTTATGATGCCGTTTCTACTCATCAAG-TTTCATTGCCTACTCCAATTATGGCAGG 61754 ||||| || ||||| | || || | | ||| |||| |||| || ||||||||| | || Sbjct 2805841 CGTTTCTACGATGCGATCTCCAC-CTTTAAGATTTCGCTGCCGACGCCAATTATGTCCGG 2805899 Query 61755 TGCTCGTACTCCGACTCGCCAGTTCTCTAGTTGTGTAGTTATTGAAGCCGGTGATTCGTT 61814 | || || ||||| ||||||||| || ||| | ||||| ||| || | Sbjct 2805900 CGTGCGCACCCCGACGCGCCAGTTCAGCTCCTGCGTACTGATTGAGTGCGGCGACAGCCT 2805959 Query 61815 AAAATCTATTAACAAAACTTC-AGCATCAATTATTGAATATATTTCTAAACGAGCTGGTA 61873 | || |||||| || || ||| | ||| | | || ||||| | || || |||| Sbjct 2805960 TGATTCCATTAACGCCACCTCCAGCG-CGATTGTGAAGTACGTTTCTCAGCGTGCCGGTA 2806018 Query 61874 TAGGTATCAACGTTGGTATGCTTCGTGCAGAAGGTTCTAAGATCGGTATGGGCGAAG--T 61931 | || || |||| ||| | ||||| || |||| | || |||| | Sbjct 2806019 TCGGCATTAACGCCGGTCGCATCCGTGCGCTGGGCAGCCCGATCCGCGGCGGTGAAGCAT 2806078 Query 61932 TCGACATACGGGTGTTATTCCATTCTGGAAACATTTCCAAACTGCAGTAAAATCTTGTTC 61991 || ||| ||| || ||||| |||| || || ||||| || || || || || || || Sbjct 2806079 TCCACAC-CGGCTGC-ATTCCGTTCTATAAGCACTTCCAGACCGCGGTGAAGTCCTGCTC 2806136 Query 61992 TCAAGGTGGTATTCGTGGTGGTGCTGCTACAGCGTATTATCCGATGTGGCACTTAGAAGT 62051 ||| || || | || || ||||| || || || || || |||||||| | ||||| Sbjct 2806137 TCAGGGCGGCGTGCGCGGCGGTGCAGCGACCCTGTTCTACCCAATGTGGCATCTGGAAGT 2806196 Query 62052 AGAGAACCTATTAGTTCTGAAAAATAACAAAGGCGTGGATGAAAACCGTATTCGACATAT 62111 || | ||| | || ||||| || ||| ||||| || | ||||| | || ||||| Sbjct 2806197 GGAAAGCCTGCTGGTGCTGAAGAACAACCGCGGCGTTGAAGGCAACCGCGTGCGTCATAT 2806256 Query 62112 GGACTACGG 62120 ||||||||| Sbjct 2806257 GGACTACGG 2806265 >seq83 Length=912621 Score = 163 bits (180), Expect = 3e-35 Identities = 317/467 (68%), Gaps = 1/467 (0%) Strand=Plus/Plus Query 61695 TCGTTTTTATGATGCCGTTTCTACTCATCAAGTTTCATTGCCTACTCCAATTATGGCAGG 61754 ||| |||||||||||||| || || | || |||| || ||||| ||||| ||||| || Sbjct 579742 TCGCTTTTATGATGCCGTGTCGACCTTTAAAATTTCCTTACCTACGCCAATCATGGCTGG 579801 Query 61755 TGCTCGTACTCCGACTCGCCAGTTCTCTAGTTGTGTAGTTATTGAAGCCGGTGATTCGTT 61814 | || || ||||||||||| ||| || || |||| || || ||| || Sbjct 579802 GGTACGGACGCCGACTCGCCAATTCAGCTCATGCGTGCTTATCGAGTGTGGCGATAGCTT 579861 Query 61815 AAAATCTATTAACAAAACTTCAGCATCAATTATTGAATATATTTCTAAACGAGCTGGTAT 61874 | | ||||| ||| ||||| | || || |||| |||| |||| || || || Sbjct 579862 AGACTCTATCAACGCCACTTCTAGTGCTATCGTTAAATACGTTTCACAACGCGCAGGGAT 579921 Query 61875 AGGTATCAACGTTGGTATGCTTCGTGCAGAAGGTTCTAAGATCGGTATGGGCGAAGTTCG 61934 |||||||| | ||| ||||||| ||| ||| || || |||| | Sbjct 579922 CGGTATCAATGCTGGCCGTATTCGTGCGCTAGGCAGCCCAATCCGTGGTGGTGAAGCTTT 579981 Query 61935 ACATACGGGTGTTATTCCATTCTGGAAACATTTCCAAACTGCAGTAAAATCTTGTTCTCA 61994 ||||| ||| ||| || |||| ||||| ||||| || || || |||||||| || || Sbjct 579982 CCATACCGGTTGTATCCCGTTCTACAAACACTTCCAGACGGCCGTGAAATCTTGCTCGCA 580041 Query 61995 AGGTGGTATTCGTGGTGGTGCTGCTACAGCGTATTATCCGATGTGGCACTTAGAAGTAGA 62054 ||| || | || || ||||| || ||| || ||| || ||||||||||| ||| | || Sbjct 580042 AGGCGGCGTACGCGGGGGTGCCGCGACACTGTTTTACCCTATGTGGCACTTGGAAATTGA 580101 Query 62055 GAACCTATTAGTTCTGAAAAATAACAAAGGCGTGGATGAAAACCGTATTCGACATATGGA 62114 | | ||||||| |||||||||||| || || || | |||||| | || || | || Sbjct 580102 AAGCTTATTAGTCCTGAAAAATAACCGTGGTGTTGAAGGTAACCGTGTCCGTCACCTAGA 580161 Query 62115 CTACGGAATTCAGATTAATGACCTTATGATGGAACGCCTTGGTAAAA 62161 ||||| | || || || | || ||| |||| | |||||||| Sbjct 580162 TTACGGCGTACAAATCAACAAACTCATGTATCAACGTC-TGGTAAAA 580207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542616716567880