Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_031095.1 Length=168758 Score E Sequences producing significant alignments: (Bits) Value seq122 201 1e-46 seq83 185 9e-42 >seq122 Length=4874392 Score = 201 bits (222), Expect = 1e-46 Identities = 344/499 (69%), Gaps = 0/499 (0%) Strand=Plus/Plus Query 136347 ACGTTATTCGTTTCTATGATGCAGTTTCTACTAAAAAGATTTCATTGCCAACACCAATTA 136406 |||| | |||||||| ||||| | || || |||||||| |||| || ||||||| Sbjct 2805833 ACGTCAAGCGTTTCTACGATGCGATCTCCACCTTTAAGATTTCGCTGCCGACGCCAATTA 2805892 Query 136407 TGTCTGGTGTTCGTACTCCAACCCGCCAGTTCAGTTCATGCGTAGTTATTGAAGGTGGTG 136466 |||| || || || || || || ||||||||||| || |||||| | ||||| | || | Sbjct 2805893 TGTCCGGCGTGCGCACCCCGACGCGCCAGTTCAGCTCCTGCGTACTGATTGAGTGCGGCG 2805952 Query 136467 ATAGTCTTAATTCAATTAACGAAGCCGCTGCATCAATTACGAAATACATTAGTAAGCGTG 136526 | || ||| |||| ||||||| || | | ||| ||| ||| || | |||||| Sbjct 2805953 ACAGCCTTGATTCCATTAACGCCACCTCCAGCGCGATTGTGAAGTACGTTTCTCAGCGTG 2806012 Query 136527 CTGGTATTGGTATTAATGCGGGGATGATTCGTGCAGAAGGATCAAAAATTGGATTCGGTG 136586 | ||||| || ||||| || || || ||||| || || | ||||| Sbjct 2806013 CCGGTATCGGCATTAACGCCGGTCGCATCCGTGCGCTGGGCAGCCCGATCCGCGGCGGTG 2806072 Query 136587 AAGTCAAGCATACTGGTGTTATTCCTTTCTGGAAACACTTCCAAACCGCAGTTAAGTCAT 136646 ||| || || || ||||| |||| || |||||||| ||||| || ||||| | Sbjct 2806073 AAGCATTCCACACCGGCTGCATTCCGTTCTATAAGCACTTCCAGACCGCGGTGAAGTCCT 2806132 Query 136647 GCTCCCAAGGCGGAGTCCGTGGTGGTGCAGCTACACTGTATTATCCGATGTGGCACTTGG 136706 |||| || ||||| || || || |||||||| || |||| || || |||||||| ||| Sbjct 2806133 GCTCTCAGGGCGGCGTGCGCGGCGGTGCAGCGACCCTGTTCTACCCAATGTGGCATCTGG 2806192 Query 136707 AAGTTGAAAACCTCCTCGTACTTAAGAACAACAAAGGTGTAGATGAAAACCGTATTCGCC 136766 |||| |||| ||| || || || ||||||||| || || || | ||||| | || | Sbjct 2806193 AAGTGGAAAGCCTGCTGGTGCTGAAGAACAACCGCGGCGTTGAAGGCAACCGCGTGCGTC 2806252 Query 136767 ATTTAGATTATGGTGTTCAGATTAATAACCTGATGATTGAACGTTTGATTAAGAATGATT 136826 || | || || || || ||| | || || |||||| | | || || | ||| ||| Sbjct 2806253 ATATGGACTACGGCGTGCAGCTGAACAAGCTGATGTATCAGCGCCTGCTGAAGGGTGAAG 2806312 Query 136827 ACATCACTCTGTTTAGTCC 136845 | || |||||||| || || Sbjct 2806313 AGATTACTCTGTTCAGCCC 2806331 Score = 154 bits (170), Expect = 2e-32 Identities = 138/173 (80%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 47305 GAAGGCGGTCAGCACCTGAACGTTAACGTGTTGCGTCGCGAAACCTTGCTGGATGCGGTT 47364 || ||||||||||| |||||||| ||||| || | || ||||| || || ||||| Sbjct 3215819 GAGGGCGGTCAGCATCTGAACGTCAACGTCCTGAGCCGTGAAACGCTGGAAGAGGCGGTG 3215760 Query 47365 GAGCACCCAGAAAAATACCCGCAGCTGACTATTCGCGTTTCCGGATACGCGGTGCGCTTC 47424 ||||||| || ||||| ||||||||||| |||||||||||||| || || ||||| || Sbjct 3215759 AAGCACCCGGAGAAATATCCGCAGCTGACCATTCGCGTTTCCGGTTATGCCGTGCGTTTT 3215700 Query 47425 AACTCCTTGACACCAGAACAGCAGCGCGACGTTATCGCTCGTACTTTCACAGA 47477 ||||| ||||| |||||||||||||| ||||| || | ||||| || || || Sbjct 3215699 AACTCTTTGACGCCAGAACAGCAGCGTGACGTGATTACGCGTACCTTTACTGA 3215647 Score = 136 bits (150), Expect = 4e-27 Identities = 134/173 (77%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 47302 ATTGAAGGCGGTCAGCACCTGAACGTTAACGTGTTGCGTCGCGAAACCTTGCTGGATGCG 47361 |||||||| ||||||||||| ||||| |||||| || || |||| ||||||| ||| Sbjct 1181493 ATTGAAGGGGGTCAGCACCTCAACGTCAACGTGATGAACCGTGAAATGCTGCTGGAAGCG 1181434 Query 47362 GTTGAGCACCCAGAAAAATACCCGCAGCTGACTATTCGCGTTTCCGGATACGCGGTGCGC 47421 | || |||| |||||||| |||||| | || |||||||| || || || ||||| || Sbjct 1181433 ATGGAAGACCCGGAAAAATATCCGCAGTTAACCATTCGCGTGTCGGGCTATGCGGTACGT 1181374 Query 47422 TTCAACTCCTTGACACCAGAACAGCAGCGCGACGTTATCGCTCGTACTTTCAC 47474 |||||||| |||| ||||||||||| || || ||| | ||||| ||||| Sbjct 1181373 TTCAACTCGCTGACTAAAGAACAGCAGCAGGATGTGATCACCCGTACCTTCAC 1181321 >seq83 Length=912621 Score = 185 bits (204), Expect = 9e-42 Identities = 319/461 (69%), Gaps = 2/461 (0%) Strand=Plus/Plus Query 136354 TCGTTTCTATGATGCAGTTTCTACTAAAAAGATTTCATTGCCAACACCAATTATGTCTGG 136413 ||| || |||||||| || || || || ||||| || || || ||||| ||| |||| Sbjct 579742 TCGCTTTTATGATGCCGTGTCGACCTTTAAAATTTCCTTACCTACGCCAATCATGGCTGG 579801 Query 136414 TGTTCGTACTCCAACCCGCCAGTTCAGTTCATGCGTAGTTATTGAAGGTGGTGATAGTCT 136473 || || || || || ||||| ||||| |||||||| |||| || |||| ||||| || Sbjct 579802 GGTACGGACGCCGACTCGCCAATTCAGCTCATGCGTGCTTATCGAGTGTGGCGATAG-CT 579860 Query 136474 TA-ATTCAATTAACGAAGCCGCTGCATCAATTACGAAATACATTAGTAAGCGTGCTGGTA 136532 || | || || |||| | || | || |||||| || | || || || | Sbjct 579861 TAGACTCTATCAACGCCACTTCTAGTGCTATCGTTAAATACGTTTCACAACGCGCAGGGA 579920 Query 136533 TTGGTATTAATGCGGGGATGATTCGTGCAGAAGGATCAAAAATTGGATTCGGTGAAGTCA 136592 | ||||| ||||| || |||||||| ||| ||| | ||||||| Sbjct 579921 TCGGTATCAATGCTGGCCGTATTCGTGCGCTAGGCAGCCCAATCCGTGGTGGTGAAGCTT 579980 Query 136593 AGCATACTGGTGTTATTCCTTTCTGGAAACACTTCCAAACCGCAGTTAAGTCATGCTCCC 136652 ||||| ||| ||| || |||| ||||||||||| || || || || || ||||| | Sbjct 579981 TCCATACCGGTTGTATCCCGTTCTACAAACACTTCCAGACGGCCGTGAAATCTTGCTCGC 580040 Query 136653 AAGGCGGAGTCCGTGGTGGTGCAGCTACACTGTATTATCCGATGTGGCACTTGGAAGTTG 136712 ||||||| || || || ||||| || ||||||| ||| || ||||||||||||||| ||| Sbjct 580041 AAGGCGGCGTACGCGGGGGTGCCGCGACACTGTTTTACCCTATGTGGCACTTGGAAATTG 580100 Query 136713 AAAACCTCCTCGTACTTAAGAACAACAAAGGTGTAGATGAAAACCGTATTCGCCATTTAG 136772 ||| | | | || || || || ||| ||||| || | |||||| | || || ||| Sbjct 580101 AAAGCTTATTAGTCCTGAAAAATAACCGTGGTGTTGAAGGTAACCGTGTCCGTCACCTAG 580160 Query 136773 ATTATGGTGTTCAGATTAATAACCTGATGATTGAACGTTTG 136813 |||| || || || || || || || ||| | ||||| || Sbjct 580161 ATTACGGCGTACAAATCAACAAACTCATGTATCAACGTCTG 580201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 539855332766640