Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_031107.1 Length=246291 Score E Sequences producing significant alignments: (Bits) Value seq122 194 3e-44 >seq122 Length=4874392 Score = 194 bits (214), Expect = 3e-44 Identities = 227/304 (75%), Gaps = 2/304 (1%) Strand=Plus/Minus Query 201791 ATGAAACAATATCTGGACTTACTGCGTGATGTTCGCGAAAACGGGGATGTA-AAAGCCGA 201849 |||||||| ||||||| ||| ||| | || | ||| | ||| | | ||| || Sbjct 3442842 ATGAAACAGTATCTGGCGTTAATGCAGCACGTGCTCGAGCA-GGGCACGCCCAAAAATGA 3442784 Query 201850 CCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAACTTACAAGA 201909 ||| ||||| || ||||| || || |||| || | |||||||| || || | || || Sbjct 3442783 CCGCACCGGAACCGGCACGCTGTCGATTTTTGGTCATCAGATGCGTTTCAATCTGCAGGA 3442724 Query 201910 AGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCATGAGCTGCT 201969 ||||||||||||||||||||||| ||| || | || || ||||| ||||||||||| Sbjct 3442723 CGGTTTTCCGCTGGTCACCACCAAGAAGTGCCATTTGCGCTCTATCATTCATGAGCTGCT 3442664 Query 201970 GTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTCACCATCTG 202029 ||||||||| | ||||||||||||||| || |||| || || || || | ||||| Sbjct 3442663 GTGGTTCCTTAACGGTGACACCAACATCGCCTACCTGAAGGAAAATAAGGTGTCGATCTG 3442604 Query 202030 GGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAATGGCGTAG 202089 |||||| ||||| ||| |||| |||||| | || ||||| || || || || ||||| || Sbjct 3442603 GGACGAGTGGGCCGATGAAAAGGGTGACCTCGGGCCGGTTTATGGCAAACAGTGGCGCAG 3442544 Query 202090 CTGG 202093 |||| Sbjct 3442543 CTGG 3442540 Score = 168 bits (186), Expect = 1e-36 Identities = 233/321 (73%), Gaps = 4/321 (1%) Strand=Plus/Minus Query 202490 CTTTCTTGTCAGCTCTATCAGCG-TAGTGCGGACATGTTCCTTGGCGTACCGTTTAACAT 202548 || || || || || |||||||| | |||| | || ||||| ||| | ||||| || || Sbjct 3442368 CTCTCCTGCCAACTGTATCAGCGCTCCTGCG-ATATCTTCCTCGGCCTGCCGTTCAATAT 3442310 Query 202549 CGCGTCTTACGCCTTGCTGGTACACATGTTTGCACAACAG-GCGAACATGGCGGTAGGCG 202607 ||| ||||| |||||||| || ||| | || || ||| |||| | ||| || || | Sbjct 3442309 CGCCAGCTACGCTTTGCTGGTGCATATGATGGCCCAGCAGTGCGACC-TGGAAGTGGGTG 3442251 Query 202608 ACTTCGTCTGGACAGGTGGTGATACGCATCTGTACTCCAACCATCTGGAACAAGCTGACC 202667 | || |||||||| ||||| ||||| ||||||||| |||||| ||||| || | || Sbjct 3442250 ATTTTGTCTGGACCGGTGGCGATACCCATCTGTACAGCAACCACCTGGAGCAGACGCGCC 3442191 Query 202668 TCCAACTTACCCGTGACCCTAAACCGTTACCGAAGTTGGTTATCAAACGTAAGCCCGATT 202727 | || || || || || || | | |||||| || ||||||| || ||||| || | Sbjct 3442190 TGCAGCTGACGCGCGAACCGCGCGCCCTGCCGAAGCTGATTATCAAGCGCAAGCCGGAGT 3442131 Query 202728 CCATCTTCGACTACAAATTCGAAGACTTCGAGGTTGTCGATTACATTTCGCATCCGGCGA 202787 | ||||||||||| || || ||||||||| | | | |||| |||||||||| | Sbjct 3442130 CTATCTTCGACTATCGCTTTGATGACTTCGAGATCGAAGGTTACGACCCGCATCCGGCCA 3442071 Query 202788 TTAAAGCGCCCGTCGCGATCT 202808 ||||||| || ||||| |||| Sbjct 3442070 TTAAAGCCCCGGTCGCCATCT 3442050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 787941509199480