Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_031126.1 Length=244840 Score E Sequences producing significant alignments: (Bits) Value seq122 158 2e-33 >seq122 Length=4874392 Score = 158 bits (174), Expect = 2e-33 Identities = 154/200 (77%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 200092 AAGAAAGACCGTACCGGTANNNNNACCACGTCTATTTTCGGTGCACAGATGCGCTTCAAT 200151 || || ||||| ||||| | || ||| ||||| ||| |||||||| |||||| Sbjct 3442791 AAAAATGACCGCACCGGAACCGGCACGCTGTCGATTTTTGGTCATCAGATGCGTTTCAAT 3442732 Query 200152 CTACAAGACGGCTTCCCATTGGTGACGACCAAGAAGTGCCATCTCCGTTCCATCATTCAC 200211 || || ||||| || || |||| || ||||||||||||||| | || || |||||||| Sbjct 3442731 CTGCAGGACGGTTTTCCGCTGGTCACCACCAAGAAGTGCCATTTGCGCTCTATCATTCAT 3442672 Query 200212 GAGCTGTTGTGGTTCCTTAACGGTGACACCAATATCAAGTATCTGAACGATAACAATGTC 200271 |||||| ||||||||||||||||||||||||| ||| || ||||| || || || || Sbjct 3442671 GAGCTGCTGTGGTTCCTTAACGGTGACACCAACATCGCCTACCTGAAGGAAAATAAGGTG 3442612 Query 200272 ACCATTTGGGACGAATGGGC 200291 | || |||||||| ||||| Sbjct 3442611 TCGATCTGGGACGAGTGGGC 3442592 Score = 154 bits (170), Expect = 2e-32 Identities = 232/328 (71%), Gaps = 4/328 (1%) Strand=Plus/Minus Query 200834 GCGAGCTTTCCTGTCAGCTGTATCAGCGTAGCGCTGATATGTTTTTAGGCGTGCCGTTCA 200893 || |||| ||||| || ||||||||||| | ||||| || | ||| ||||||||| Sbjct 3442373 GCAAGCTCTCCTGCCAACTGTATCAGCGCTCCTGCGATATCTTCCTCGGCCTGCCGTTCA 3442314 Query 200894 ACATTGCATCATACGCACTACTGATTCACATGGTAGCCCAACAGGTCAATATGACTGTCG 200953 | || || ||||| | ||| | || ||| | ||||| ||| | | || || | Sbjct 3442313 ATATCGCCAGCTACGCTTTGCTGGTGCATATGATGGCCCAGCAGTGCGACCTGGAAGTGG 3442254 Query 200954 GTGATTTCGTATGGACGGGTGGTGACGTACACATCT--ACAGCAATCACGAAGAGCAGGT 201011 ||||||| || ||||| ||||| || ||| ||||| ||||||| ||| |||||| Sbjct 3442253 GTGATTTTGTCTGGACCGGTGGCGA--TACCCATCTGTACAGCAACCACCTGGAGCAGAC 3442196 Query 201012 TCGTCTGCAACTGTCTCGTGATCCGCGTCCTTTACCGAAGTTGAAAATTCTTCGTAAGCC 201071 || ||||| ||| | || || ||||| | | |||||| ||| || || ||||| Sbjct 3442195 GCGCCTGCAGCTGACGCGCGAACCGCGCGCCCTGCCGAAGCTGATTATCAAGCGCAAGCC 3442136 Query 201072 GGACTCTATCTTCGATTACAAGTTCGAAGACTTTGAGCTTACTGGTTACGAACCGCATCC 201131 ||| ||||||||||| || || || ||||| ||| | |||||||| |||||||| Sbjct 3442135 GGAGTCTATCTTCGACTATCGCTTTGATGACTTCGAGATCGAAGGTTACGACCCGCATCC 3442076 Query 201132 TGCGATAAAAGCACCGGTGGCGATATGA 201159 || || ||||| ||||| || || ||| Sbjct 3442075 GGCCATTAAAGCCCCGGTCGCCATCTGA 3442048 Score = 89.7 bits (98), Expect = 8e-13 Identities = 141/200 (71%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 200503 GGTGAGTTAGGGCCTGTGTATGGTAAGCAGTGGCGTGATTGGATCGGGC--CAGATGGTC 200560 ||||| | ||||| || ||||| || |||||||| ||| |||| | ||||| | Sbjct 3442581 GGTGACCTCGGGCCGGTTTATGGCAAACAGTGGCGCAGCTGGG--GGGCAGCGGATGGGC 3442524 Query 200561 AACACCACGACCAAATCAGCACGGTCATCGACCAGCTACGTAATGATCCGGACAGTCGTC 200620 || |||||| | |||| ||| |||| ||||| | || |||||| || | Sbjct 3442523 GCCAGATCGACCAGCTGAGCAAGGTGGTCGAACAGCTGAAAAGCGACCCGGACTCGCGCC 3442464 Query 200621 GCATTATCGTTAGTGCATGGAATGTGGGTGAGTTGGATAAAATGGCTTTAGCGCCTTGCC 200680 |||| |||||| ||||||||| || || || ||||| | ||||| | || || |||| Sbjct 3442463 GCATCATCGTTTCTGCATGGAACGTCGGCGAACTGGATGAGATGGCGCTGGCCCCGTGCC 3442404 Query 200681 ATTCCTTCTTCCAGTTCTAC 200700 | | ||||||||||||||| Sbjct 3442403 ACGCGTTCTTCCAGTTCTAC 3442384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 783298672704000