Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq83 87.8 2e-12 seq122 84.2 3e-11 >seq83 Length=912621 Score = 87.8 bits (96), Expect = 2e-12 Identities = 194/286 (68%), Gaps = 5/286 (2%) Strand=Plus/Plus Query 157698 ATACGTTTCTACGTATCATTTGCATGTTCGTTTGCTTTTGGCGAGAACAAACTGATGGAA 157757 || ||||||||||| ||||| ||||| || || || | |||| | ||||||||| Sbjct 582203 ATTCGTTTCTACGTGAGCTTTGCTTGTTCATTCGCGTTCGCCGAGCGTGAGCTGATGGAA 582262 Query 157758 GGCAACGCTAAGATTATTTCTCTCATTGCGAGAGATGAATCTCAGCACATGACCATTACA 157817 || || || ||||| || ||| || || | || ||| | | |||| |||| ||| Sbjct 582263 GGTAATGCCAAGATCATCCGTCTTATCGCACGGGACGAAGCCCTGCACCTGACGGGAACA 582322 Query 157818 CAGAACATTCTTAAT-AAATGGAAAGCG--GGAGATGACCCTGCCATGGTTGAGATTGCA 157874 ||| | || || ||| || ||||| | |||||| || | ||| |||||||| Sbjct 582323 CAGCATATGCTAAATCTGCTGCGAAGCGGTGAAGATGATCCGGAAATGAAAGAGATTGCT 582382 Query 157875 CAAGAAGAAGAG-AAGAACGTCTACGAGATGTTCAAAAAGTGTGTTGAAGAAGAAGTAAT 157933 || ||| |||| | || ||| | ||||||||| || ||| | ||| | Sbjct 582383 GCTGAGTGCGAGCAAGAGTG-CTTTGAGCTATTCAAAAAGGCTGCTGAGCAGGAAAAAGA 582441 Query 157934 TTGGGCAGACTACTTGTTCCGTGACGGATCAATGATTGGTCTGAAT 157979 |||||||| ||| |||||||||| || || ||||| || ||||| Sbjct 582442 GTGGGCAGAATACCTGTTCCGTGATGGCTCGATGATCGGAATGAAT 582487 >seq122 Length=4874392 Score = 84.2 bits (92), Expect = 3e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 165787 TAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGGTTCGAGTCCTGT 165845 |||||||||||||||||||| | ||||||||||| || |||||||||||||| |||||| Sbjct 814347 TAGCTCAGTTGGATAGAGCACCGGCCTTCTAAGCCGTAGGTCACAGGTTCGAATCCTGT 814405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622021699663560