Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq83 87.8 2e-12 seq122 84.2 2e-11 >seq83 Length=912621 Score = 87.8 bits (96), Expect = 2e-12 Identities = 240/368 (65%), Gaps = 0/368 (0%) Strand=Plus/Plus Query 154482 AAATACGTTGCACAAAGGGCGGGCATCGGTATCAACGCAGGCAGAATCCGTGGCATCAAC 154541 ||||||||| ||||| | || || ||||||||||| || ||| | || |||| | | Sbjct 579896 AAATACGTTTCACAACGCGCAGGGATCGGTATCAATGCTGGCCGTATTCGTGCGCTAGGC 579955 Query 154542 AGTAAAATCAGAGGTGGAGAAGTTCAGCACACGGGTGTTGTACCATTCCTCAAAAAGTTT 154601 || |||| | ||||| |||| | || || ||| | | || ||| |||| | || Sbjct 579956 AGCCCAATCCGTGGTGGTGAAGCTTTCCATACCGGTTGTATCCCGTTCTACAAACACTTC 580015 Query 154602 GAGTCAACTGTCAGATGTTGTACACAGAATGGCATCCGAGGTGGATCAGCGACAGTACAC 154661 || | | || | || ||| | || ||| | || || || | |||||| | Sbjct 580016 CAGACGGCCGTGAAATCTTGCTCGCAAGGCGGCGTACGCGGGGGTGCCGCGACACTGTTT 580075 Query 154662 TTCCCCATCTGGCACCAAGAAATCGAAGACATCATTGTCCTAAAAAATAATAAGGGAACG 154721 | ||| || |||||| ||||| ||| | | | ||||| |||||||| || Sbjct 580076 TACCCTATGTGGCACTTGGAAATTGAAAGCTTATTAGTCCTGAAAAATAACCGTGGTGTT 580135 Query 154722 GAAGATAACCGAGTTCGTAAGTTAGATTATAGTATTCAATTCAGTAAACTCTTCTATGAA 154781 |||| |||||| || ||| | ||||||| | | ||| ||| |||||| | ||| || Sbjct 580136 GAAGGTAACCGTGTCCGTCACCTAGATTACGGCGTACAAATCAACAAACTCATGTATCAA 580195 Query 154782 CGTTTCATCTCCAACGGAGAAATCTCCCTCTTCAGTCCGCACAATGTTCCTGGTCTGTAT 154841 ||| | | ||| || ||||| || |||||||| |||| || || || || Sbjct 580196 CGTCTGGTAAAAGGCGGCGATATCTCGCTATTCAGTCCATCGGATGTGCCAGGGCTATAC 580255 Query 154842 GATGCTTT 154849 ||||| || Sbjct 580256 GATGCCTT 580263 >seq122 Length=4874392 Score = 84.2 bits (92), Expect = 2e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 159830 TAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGGTTCGAGTCCTGT 159888 |||||||||||||||||||| | ||||||||||| || |||||||||||||| |||||| Sbjct 814347 TAGCTCAGTTGGATAGAGCACCGGCCTTCTAAGCCGTAGGTCACAGGTTCGAATCCTGT 814405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557610742631160