Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_031280.1 Length=104906 Score E Sequences producing significant alignments: (Bits) Value seq122 96.9 2e-15 seq109 84.2 1e-11 >seq122 Length=4874392 Score = 96.9 bits (106), Expect = 2e-15 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 7852 CGCCATTAGCTCAGATGGATAGAGCATCTGCCTTCTAAGTAGATGGTCACGGGTTCGAAT 7911 |||| ||||||||| ||||||||||| | |||||||||| | |||||| ||||||||| Sbjct 814341 CGCCCTTAGCTCAGTTGGATAGAGCACCGGCCTTCTAAGCCGTAGGTCACAGGTTCGAAT 814400 Query 7912 CCTGTATGGCGTACCAAT 7929 |||||| ||||||||||| Sbjct 814401 CCTGTAGGGCGTACCAAT 814418 >seq109 Length=705085 Score = 84.2 bits (92), Expect = 1e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 7852 CGCCATTAGCTCAGATGGATAGAGCATCTGCCTTCTAAGTAGATGGTCACGGGTTCGAAT 7911 |||| ||||||||| ||||||||||| | |||||||||| | ||||| ||||||||| Sbjct 321747 CGCCCTTAGCTCAGTTGGATAGAGCACCGGCCTTCTAAGCCGTAGGTCATAGGTTCGAAT 321806 Query 7912 CCTGTATGGCGTACCAATT 7930 ||| || ||||||||| || Sbjct 321807 CCTATAGGGCGTACCATTT 321825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 335548785501181