Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq275 109 1e-18 seq43 109 1e-18 seq3962 96.9 8e-15 >seq275 Length=398669 Score = 109 bits (120), Expect = 1e-18 Identities = 143/196 (73%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 151915 CTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GCTTTTCCCGGCGAA 151972 ||||||| |||||||| || | | || | |||||| || || ||||| || || || Sbjct 170725 CTTTTTGAATGTTGTAGTCTGACAGTGTGCGCCCATCCTCAAGCTGCTTT--CCAGCAAA 170668 Query 151973 GATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGT 152032 ||||| | ||||||||| | | |||||||||||| || |||||||| |||||| | Sbjct 170667 AATAAGACGCTGCTGGTCTGGGGGGATTCCTTCCTTGTCCTGAATTTTGGCTTTGACGTT 170608 Query 152033 CTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCAC 152092 ||| | |||||| || || || | || |||||||| || ||||| || ||||| Sbjct 170607 CTCAATAGAGTCTGAGGGTTCAACCTCTAAGGTGATAGTTTTCCCAGTGAGGGTTTTCAC 170548 Query 152093 GAAGACCTGCATTTTA 152108 |||| ||||||| || Sbjct 170547 AAAGATCTGCATTGTA 170532 >seq43 Length=2082672 Score = 109 bits (120), Expect = 1e-18 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||||||||| || || || || || || || ||||| || | ||||| | ||||| Sbjct 901058 GAGGACAAGATGGAGGGTGGATTCCTTCTGAATATTGTAGTCAGACAAAGTACGGCCATC 900999 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 ||| || || ||||| ||||| | ||||||||||| | | ||| || || || || Sbjct 900998 TTCAAGCTGCTTACCGGCAAAGATCAATCTCTGCTGGTCTGGGGGGATGCCCTCTTTATC 900939 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 || || || ||||| |||| | | || || ||| || || ||||| || || Sbjct 900938 CTGGATCTTAGCCTTGACGTTCTCGATGGAATCCGAGGGCTCAACCTCCAGAGTGATGGT 900879 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || ||||||||||||| |||||| Sbjct 900878 CTTGCCTGTCAGGGTCTTCACGAAGATCTGCAT 900846 >seq3962 Length=6517 Score = 96.9 bits (106), Expect = 8e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| |||||||| || || || ||||| ||||||||||| || | || || | || || Sbjct 399 GAGAACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAAGGTGCGGCCGTC 340 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || ||||||||||| || | |||||| || | | ||| || || || || Sbjct 339 CTCGAGTTGCTTGCCGGCGAAGATCAGTCGCTGCTGATCTGGGGGGATGCCCTCTTTGTC 280 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 || || || ||||| |||| | | || || ||| || || ||||| || || Sbjct 279 CTGGATCTTAGCCTTGACGTTCTCGATGGAATCCGAGGGCTCAACCTCCAGAGTGATGGT 220 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || ||||| ||||| | |||||| Sbjct 219 CTTGCCTGTAAGGGTCTTGACGAAAATCTGCAT 187 Score = 87.8 bits (96), Expect = 4e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| |||||||| || ||||| ||||| ||||||||||| || | || || | ||||| Sbjct 171 GAGAACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCAGACAAGGTGCGGCCATC 112 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || ||||||||||| || |||||||| || | | ||| || ||||| || Sbjct 111 CTCAAGTTGCTTGCCGGCGAAGATCAGTCTCTGCTGATCTGGGGGGATGCCCTCCTTGTC 52 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGA 152047 || || || || ||| |||| | | |||||| Sbjct 51 CTGGATCTTAGCCTTCACATTCTCAATGGAGTCTGA 16 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153728212010473