Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_031924.1 Length=47564 Score E Sequences producing significant alignments: (Bits) Value seq122 134 4e-27 seq4531 87.8 5e-13 >seq122 Length=4874392 Score = 134 bits (148), Expect = 4e-27 Identities = 234/338 (69%), Gaps = 7/338 (2%) Strand=Plus/Minus Query 36440 ACCACCAAGCATCTGCATCACGCCGCCCATCTGCGGAATGACAATCTCTGTGGTGTATCT 36499 ||| || ||||||||||| |||||| | | || |||| || |||||||| | Sbjct 4802364 ACCGCCCAGCATCTGCATGGTGCCGCCAACGTT---AACCACAACTTCGGTGGTGTACTT 4802308 Query 36500 GTCTATTCCGTTGCTGTCAGTCCATTTACGAGTACGAAGCTGGCCTTCGATGTAAACCTG 36559 || | || ||||||||||||||| || | || ||||||||| |||||||| Sbjct 4802307 CTCAACGCCAGCCTGGTCAGTCCATTTACGGGTCTGCAGTGCGCCTTCGATATAAACCTG 4802248 Query 36560 CGAACCTTTTCGAAGGTATTCTCCTGCAACTTCCGCAAGTTTCCCGAATATGACAATACG 36619 || ||||| || |||||||| || || ||||| || || || ||||| | |||| || Sbjct 4802247 AGAGCCTTTACGCAGGTATTCACCGGCCACTTCAGCCAGCTTGCCGAACAGCACAACGCG 4802188 Query 36620 ATGCCACTCTGTCTGTTCTTTCTTTTCTCCTGTCTGCTTATCTTTCCACTGCTCAGATGT 36679 ||||| || || | ||||| |||| || |||||||| || ||| || || || Sbjct 4802187 GTGCCATTCAGTTTTCTCTTTGGTTTCGCCGGTCTGCTTGTCGCGCCAGGATTCGGAGGT 4802128 Query 36680 TGCAACGGAAATGTTGACAATTGCAGAACCTGATGCTGAA--TATTTAACTTCAGGGTCG 36737 || | | |||||| ||| ||| || || | | | || |||||| ||||| Sbjct 4802127 AGCCAGAGTGATGTTGGCAACGGCACCGCC--ATTCGGCATGTAGCGAACTTCCGGGTCC 4802070 Query 36738 TTTCCGAGAGTTCCGACAATAATTACTTTATTTACGCC 36775 | || ||| ||||||| | ||||||||| |||||||| Sbjct 4802069 TGCCCCAGATTTCCGACTAAAATTACTTTGTTTACGCC 4802032 >seq4531 Length=1107 Score = 87.8 bits (96), Expect = 5e-13 Identities = 143/203 (70%), Gaps = 16/203 (8%) Strand=Plus/Minus Query 25076 TTATTCTTGCGGTGGTTCTGGTAGTGGCATCCAGTGAGTCACGTACTTACCATAGTGATT 25135 |||||| | ||||||| | |||||||| |||||| || ||||| || |||||||| Sbjct 827 TTATTCCTCCGGTGGTGCGGGTAGTGGTTGCCAGTGTGTGACGTATCCGCCGTAGTGATT 768 Query 25136 CCAGAATGGCTTTCTCCCG--------TCATCAGGAACGATGTAATAATCATGCTGAACT 25187 ||||||||| ||| || || || || ||| | ||||||| ||||| || Sbjct 767 CCAGAATGG--TTCAAACGAGCAACATTCTTCTGGTACGTTCCAATAATCGTGCTGTACA 710 Query 25188 GCGTTATTCAACGTTTCATACACCAGGAACTCCTTATCCGTACACCCATTTCCAGGTAGC 25247 |||||||| ||||| ||||||||| |||| ||| | | | | || || || Sbjct 709 CGGTTATTCAGGGTTTCGTACACCAGGTACTCGATATGCCCGAAGCAA--GCCTGG-GGC 653 Query 25248 ATC---TCACTACACTTAATCCA 25267 ||| ||||||||||||||||| Sbjct 652 ATCCGATCACTACACTTAATCCA 630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152071889097156