Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_031934.1 Length=168929 Score E Sequences producing significant alignments: (Bits) Value seq83 152 6e-32 seq122 120 3e-22 >seq83 Length=912621 Score = 152 bits (168), Expect = 6e-32 Identities = 317/468 (68%), Gaps = 3/468 (1%) Strand=Plus/Minus Query 142429 TTTTACCGAAACGTTCCATCATCAGGTCGTTCAACTGGATTCCGTAGTCCATATGACGAA 142488 ||||||| | ||||| ||| || | ||| | || | ||||| || | ||||| | Sbjct 580207 TTTTACC-AGACGTTGATACATGAGTTTGTTGATTTGTACGCCGTAATCTAGGTGACGGA 580149 Query 142489 TACGGTTCTCATCGACACCCTTGTTGTTTTTCAGAACGAGCAGATTTTCAACTTCCAAAT 142548 |||||| | || ||||| ||| |||||||| || | | |||||| |||||| | Sbjct 580148 CACGGTTACCTTCAACACCACGGTTATTTTTCAGGACTAATAAGCTTTCAATTTCCAAGT 580089 Query 142549 GCCAAATAGGATAATAAGCAGTAGCAGCGCCGCCACGGATTCCACCTTGTGAACATGATT 142608 |||| ||||| ||| | || || || || || || | || ||||| || || |||| Sbjct 580088 GCCACATAGGGTAAAACAGTGTCGCGGCACCCCCGCGTACGCCGCCTTGCGAGCAAGATT 580029 Query 142609 TAACAGCAGTCTGGAAATGTTTCCAGAATGGAATAACACCGGTATGCTTGACTTCGCCCA 142668 | || || |||||||| ||||| |||| || ||| ||||||||| |||| || Sbjct 580028 TCACGGCCGTCTGGAAGTGTTTGTAGAACGGGATACAACCGGTATGGAAAGCTTCACCAC 579969 Query 142669 TGCCAATACGAGAACCTTCAGCACGAATCATACCAACGTTGATACCAATACCTGCACGTT 142728 | || | ||| |||||||| ||| | |||||||| || ||||| |||| Sbjct 579968 CACGGATTGGGCTGCCTAGCGCACGAATACGGCCAGCATTGATACCGATCCCTGCGCGTT 579909 Query 142729 TAGAAATGTATTCAATTATTGAGTTAGCAGTTTTGTTAATAGATT-TCAGCGAGTCGCCG 142787 |||| ||||| || || | ||| ||| ||| ||||| | | ||| | ||||| Sbjct 579908 GTGAAACGTATTTAACGATAGCACTAGAAGTGGCGTTGATAGAGTCTAAGCTA-TCGCCA 579850 Query 142788 GCTTCAATAACCACACAAGAACTAAATTGACGGGTTGGTGTACGTGCTCCAGCCATAATA 142847 || |||| ||| || || || ||||| || || || || ||| | |||||||| || Sbjct 579849 CACTCGATAAGCACGCATGAGCTGAATTGGCGAGTCGGCGTCCGTACCCCAGCCATGATT 579790 Query 142848 GGAGTAGGCAATGAAACCTGACGAGTACTTACAGCATCATAAAAACGA 142895 || ||||| || |||| | | || || ||||||||||| ||| Sbjct 579789 GGCGTAGGTAAGGAAATTTTAAAGGTCGACACGGCATCATAAAAGCGA 579742 >seq122 Length=4874392 Score = 120 bits (132), Expect = 3e-22 Identities = 278/419 (66%), Gaps = 0/419 (0%) Strand=Plus/Minus Query 142448 CATCAGGTCGTTCAACTGGATTCCGTAGTCCATATGACGAATACGGTTCTCATCGACACC 142507 |||||| | ||||| ||| | ||||||||||||||||| | ||||| | || || || Sbjct 2806287 CATCAGCTTGTTCAGCTGCACGCCGTAGTCCATATGACGCACGCGGTTGCCTTCAACGCC 2806228 Query 142508 CTTGTTGTTTTTCAGAACGAGCAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGC 142567 |||||| ||||| || ||||| |||| ||||||| |||||| || || || | Sbjct 2806227 GCGGTTGTTCTTCAGCACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAACAG 2806168 Query 142568 AGTAGCAGCGCCGCCACGGATTCCACCTTGTGAACATGATTTAACAGCAGTCTGGAAATG 142627 || || || ||||| || | || || || || || || || || || |||||||| || Sbjct 2806167 GGTCGCTGCACCGCCGCGCACGCCGCCCTGAGAGCAGGACTTCACCGCGGTCTGGAAGTG 2806108 Query 142628 TTTCCAGAATGGAATAACACCGGTATGCTTGACTTCGCCCATGCCAATACGAGAACCTTC 142687 || |||| ||||| ||||| || |||| || || || | || Sbjct 2806107 CTTATAGAACGGAATGCAGCCGGTGTGGAATGCTTCACCGCCGCGGATCGGGCTGCCCAG 2806048 Query 142688 AGCACGAATCATACCAACGTTGATACCAATACCTGCACGTTTAGAAATGTATTCAATTAT 142747 ||||| || ||| |||| || || ||||| ||||| | ||||| ||| | | || Sbjct 2806047 CGCACGGATGCGACCGGCGTTAATGCCGATACCGGCACGCTGAGAAACGTACTTCACAAT 2805988 Query 142748 TGAGTTAGCAGTTTTGTTAATAGATTTCAGCGAGTCGCCGGCTTCAATAACCACACAAGA 142807 | | | | || |||||| || | || ||||||| ||||| | || || || Sbjct 2805987 CGCGCTGGAGGTGGCGTTAATGGAATCAAGGCTGTCGCCGCACTCAATCAGTACGCAGGA 2805928 Query 142808 ACTAAATTGACGGGTTGGTGTACGTGCTCCAGCCATAATAGGAGTAGGCAATGAAACCT 142866 || || || || || || || || | || | |||||| || || |||| |||| || Sbjct 2805927 GCTGAACTGGCGCGTCGGGGTGCGCACGCCGGACATAATTGGCGTCGGCAGCGAAATCT 2805869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 540402489927720