Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq3962 172 1e-37 seq109 170 4e-37 seq43 152 1e-31 seq122 131 4e-25 seq275 114 3e-20 seq385 87.8 4e-12 seq535 86.0 1e-11 seq187 86.0 1e-11 seq118 86.0 1e-11 seq95 86.0 1e-11 seq42 86.0 1e-11 seq10 86.0 1e-11 seq5 86.0 1e-11 >seq3962 Length=6517 Score = 172 bits (190), Expect = 1e-37 Identities = 177/229 (77%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG- 282930 |||||||||||| || || || ||||| | ||| |||||| |||||||||||||||| Sbjct 414 ACCACCACGCAGACGGAGAACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGA 355 Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 |||| |||||||| ||||| ||||| || ||||| ||||||| || || || || | Sbjct 354 CAAG-GTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAAGATCAGTCGCTGCTGATCTGGGG 296 Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 | || ||||| ||||| |||||||| || || ||| | ||||| | ||||| | || | Sbjct 295 GGATGCCCTCTTTGTCCTGGATCTTAGCCTTGACGTTCTCGATGGAATCCGAGGGCTCAA 236 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | || |||||||| ||||| || || | ||||| ||||| |||||||| Sbjct 235 CCTCCAGAGTGATGGTCTTGCCTGTAAGGGTCTTGACGAAAATCTGCAT 187 Score = 132 bits (146), Expect = 1e-25 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 282910 CTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGA 282969 |||| || ||||| ||||||| || || ||||||||||| || || || || ||||||| Sbjct 6288 CTTTCTGAATGTTATAGTCAGAGAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGA 6229 Query 282970 TCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTAT 283029 ||| ||| || ||||| ||||| ||||||||||| ||||| || || || || | | Sbjct 6228 TCAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATTTTGGCCTTCACATTCT 6169 Query 283030 CGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGA 283089 | || | ||| || | || || || || ||||| ||||| || || | |||||| || | Sbjct 6168 CAATTGAGTCAGAGGGCTCAACCTCTAGTGTGATGGTCTTGCCGGTAAGAGTCTTGACAA 6109 Query 283090 ATATCTGCATT 283100 | ||||||||| Sbjct 6108 AAATCTGCATT 6098 Score = 127 bits (140), Expect = 4e-24 Identities = 130/167 (78%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 282910 CTTTTTGGATGTTGTAGTCAG-CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 ||||||||||||||||||| | |||| |||||||||||||| ||||| || || || || Sbjct 5981 CTTTTTGGATGTTGTAGTCTGACAAG-GTGCGGCCATCCTCAAGTTGCTTGCCAGCGAAA 5923 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 ||||| | || || || |||||||||||||||||||||||||| || || || | Sbjct 5922 ATCAATCTCTGCTGATCTGGGGGAATACCCTCCTTGTCTTGGATCTTGGCCTTAACATTC 5863 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 ||||||| || || | || || || || ||||| ||||| || || Sbjct 5862 TCGATAGAATCTGAGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGT 5816 Score = 123 bits (136), Expect = 5e-23 Identities = 132/172 (77%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG- 282930 |||||||||||| || || || ||||| | || |||||| |||||||||||||||| Sbjct 186 ACCACCACGCAGACGGAGAACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCAGA 127 Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 |||| |||||||||||||| ||||| || ||||| ||||||| | || || || | Sbjct 126 CAAG-GTGCGGCCATCCTCAAGTTGCTTGCCGGCGAAGATCAGTCTCTGCTGATCTGGGG 68 Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGA 283042 | || ||||||||||| |||||||| || || || | || || | ||| || Sbjct 67 GGATGCCCTCCTTGTCCTGGATCTTAGCCTTCACATTCTCAATGGAGTCTGA 16 >seq109 Length=705085 Score = 170 bits (188), Expect = 4e-37 Identities = 258/358 (72%), Gaps = 8/358 (2%) Strand=Plus/Minus Query 301432 GACCCCTATATCAACGTCGATCCGGGGACGATGAGCCCGACTCAACATGGAGAAGTGTTC 301491 ||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||| ||| Sbjct 588957 GACCCCTATATCAACGTCGATCCTGGGACGATGAGCCCTACTCAACATGGTGAAGTATTC 588898 Query 301492 GTGACGGATGATGGTGCTGAAACCGATCTGGATCTGGGGCACTACGAACGTTTCACTTCA 301551 || ||||| |||||||| ||||| ||||| || | || |||||||| ||||| | ||| Sbjct 588897 GTCACGGACGATGGTGCCGAAACAGATCTCGACTTAGGTCACTACGAGCGTTTTA-TTCG 588839 Query 301552 TTAACCCTTAAG-CGTGAAAGTAATTTTACGACTGGCCAAGTTTATTTAAAAGTTATCGA 301610 | | | | || ||| | || ||||||||||| | | || | |||| | Sbjct 588838 TACCCGCATGAGCCGTCGTAACAACTTTACGACTGGACGCATCTACTCTGAAGTACTGAG 588779 Query 301611 AAATGAACGCGAAGGTAGCTATCTCGGAAAGACGGTGCAAGTTGTTCCCCACATCACCGA 301670 ||| ||||| || ||| | || ||| | ||||| |||| || ||||| | Sbjct 588778 AAAAGAACGTCGTGGCGATTATTTGGGCGCGACCATCCAAGTCATTCCTCATATCACTAA 588719 Query 301671 TGAAATCAAAAGAAGAATTCAC-ATTGCGGCTGAAAAATCA-GATATACTTATTGG-AGA 301727 || || ||| | || | | ||||| || ||| ||| | | |||||| || Sbjct 588718 TGCGATTAAAGAGCGTATCATCGAAGGCGGC--GAAGGTCACGATGT-CGTATTGGTCGA 588662 Query 301728 AATTGGAGGAACGGTCGGAGATATCGAATCGCTTCCTTTTATAGAAGCGATTCGTCAA 301785 |||||| |||||||| || |||||||||||||| ||||| |||| || ||||||||| Sbjct 588661 AATTGGCGGAACGGTTGGGGATATCGAATCGCTGCCTTTCTTAGAGGCTATTCGTCAA 588604 >seq43 Length=2082672 Score = 152 bits (168), Expect = 1e-31 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| || || || ||||| | ||| ||| || || || |||||||||| Sbjct 901072 CCACCACGCAGACGGAGGACAAGATGGAGGGTGGATTCCTTCTGAATATTGTAGTCAGAC 901013 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | || |||||||| || || || || |||||||||||||| | || ||||| || Sbjct 901012 AAAGTACGGCCATCTTCAAGCTGCTTACCGGCAAAGATCAATCTCTGCTGGTCTGGGGGG 900953 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||| || || |||||||| || || ||| | ||||| | ||||| | || || Sbjct 900952 ATGCCCTCTTTATCCTGGATCTTAGCCTTGACGTTCTCGATGGAATCCGAGGGCTCAACC 900893 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || |||||||| ||||| || |||| ||||| ||||| |||||||| Sbjct 900892 TCCAGAGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCAT 900846 Score = 149 bits (164), Expect = 1e-30 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG-C 282931 ||||| |||| || | || |||||||| ||| || || ||||| |||||||||| | Sbjct 901300 CCACCGCGCAAACGCAAGACAAGATGTAAAGTGGACTCCTTCTGGATATTGTAGTCAGAC 901241 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| ||||| ||||| || || || || || |||||||||||||| || || || || Sbjct 901240 AAG-GTGCGACCATCTTCAAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGATCTGGGGG 901182 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || || ||||||||||| || || |||||| | || |||| || || | ||| || Sbjct 901181 GATGCCTTCTTTGTCTTGGATTTTGGCCTTTACGTTCTCAATAGAATCAGAGGGTTCAAC 901122 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 ||| ||||| || ||||| || || | ||||| || || ||||||||| Sbjct 901121 TTCCAGAGTAATGGTCTTGCCAGTGAGTGTCTTGACAAAGATCTGCATT 901073 >seq122 Length=4874392 Score = 131 bits (144), Expect = 4e-25 Identities = 350/526 (67%), Gaps = 12/526 (2%) Strand=Plus/Minus Query 301430 TGGACCCCTATATCAACGTCGATCCGGGGACGATGAGCCCGACTCAACATGGAGAAGTGT 301489 ||||||| || |||||||| |||||||| || ||||||||||| || || || || || | Sbjct 3402497 TGGACCCGTACATCAACGTGGATCCGGGCACCATGAGCCCGACCCAGCACGGTGAGGTCT 3402438 Query 301490 TCGTGACGGATGATGGTGCTGAAACCGATCTGGATCTGGGGCACTACGAACGTTTCACTT 301549 ||||||| ||||| || || || |||||||| || || || |||||||| || |||| | Sbjct 3402437 TCGTGACCGATGACGGCGCAGAGACCGATCTTGACCTCGGTCACTACGAGCGCTTCA--T 3402380 Query 301550 CATTA--ACCCTTAAGCGTGAAAGTAATTTTACGACTGGCCAAGTTTATTTAAAAGTTAT 301607 | || | | | ||| | ||| || || ||||||| | || | | |||| | Sbjct 3402379 CCGTACCAAAATGAGCCGTCGTAATAACTTCACCACTGGCCGTATCTACTCAGAAGTGCT 3402320 Query 301608 -CGAAAATGAACGCGAAGGTAGCTATCTCGGAAAGACGGTGCAAGTTGTTCCCCACATCA 301666 || ||| || ||| ||| |||||| || ||| | || || | || || || | Sbjct 3402319 GCGCAAA-GAGCGCCGCGGTGACTATCTGGGCGCGACCATTCAGGTGATCCCACATATTA 3402261 Query 301667 CCGATGAAATCAAAAGAAGAATTCAC-ATTGCGGCTGAAAAATCAGATATACTTATTGGA 301725 || ||| |||||| | || | | ||||| ||| ||| | | | | Sbjct 3402260 CCAATGCGATCAAAGAGCGCATCATCGAAGGCGGC-GAAGGCCACGATGTCGTGCTGGTT 3402202 Query 301726 GAAATTGGAGGAACGGTCGGAGATATCGAATCGCTTCCTTTTATAGAAGCGATTCGTCAA 301785 |||||||| || || || || || |||||||| || || || | ||||||||||| || Sbjct 3402201 GAAATTGGTGGCACCGTGGGTGACATCGAATCACTGCCGTTCCTCGAAGCGATTCGCCAG 3402142 Query 301786 CTCTCTCATGACGAAGGAACGGCCAATGTTCTGTTCATTCATCTCGTGCTCTTACCCTAT 301845 | | ||| | ||| | | ||| ||| || || ||| | || ||| Sbjct 3402141 ATGGCGGTTGATGTAGGTCGTGAGCACACCATGTACATGCACCTGACGCTGGTGCCTTAT 3402082 Query 301846 ATAGCGACTGCTGGTGAGTTGAAATCAAAGCCAGCACAGCATTCGGTTAAAGAATTGATG 301905 || || |||| || || ||||| | |||||| | ||||||||||| |||||| || || Sbjct 3402081 ATGGCTGCTGCGGGCGAAGTGAAAACCAAGCCAACCCAGCATTCGGTGAAAGAACTGCTG 3402022 Query 301906 TCTCAAGGATTATT--ACCTCACATTATCATCAGCCGCTCTGACCG 301949 || || |||| ||| || | | ||| |||| |||||||| Sbjct 3402021 TCGATCGG--TATTCAGCCTGACGTGCTGATCTGCCGTTCTGACCG 3401978 >seq275 Length=398669 Score = 114 bits (126), Expect = 3e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 282910 CTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGA 282969 ||||||| ||||||||||| | || ||||| |||||||| || || || || ||||| | Sbjct 170725 CTTTTTGAATGTTGTAGTCTGACAGTGTGCGCCCATCCTCAAGCTGCTTTCCAGCAAAAA 170666 Query 282970 TCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTAT 283029 | | ||| || ||||| || || || |||||||| || || || ||||| ||| | | Sbjct 170665 TAAGACGCTGCTGGTCTGGGGGGATTCCTTCCTTGTCCTGAATTTTGGCTTTGACGTTCT 170606 Query 283030 CGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGA 283089 | |||| ||| || | ||| || || | ||||| || || || || | || || || | Sbjct 170605 CAATAGAGTCTGAGGGTTCAACCTCTAAGGTGATAGTTTTCCCAGTGAGGGTTTTCACAA 170546 Query 283090 ATATCTGCATT 283100 | ||||||||| Sbjct 170545 AGATCTGCATT 170535 >seq385 Length=166179 Score = 87.8 bits (96), Expect = 4e-12 Identities = 168/237 (71%), Gaps = 13/237 (5%) Strand=Plus/Plus Query 109939 GCAACATCATCAAATTGCGGGAACCCCCTAAAGCATATGATACCAAGGTTGATTGTGAAA 109998 || ||| | |||||||||||||| | |||||||| | | ||||||| | || |||| Sbjct 162217 GCGACACCCTCAAATTGCGGGAAACTCCTAAAGCCTTTACTACCAAGCGTACGTG-GAAA 162275 Query 109999 GCATCAGC-TGGCCGAG--AACAGAACTCGGGTATGGTAAAAATTCATATGATGCCACAA 110055 || || |||||||| | ||| || ||||||||||| ||| | | ||||| |||| Sbjct 162276 -CACGGGCGTGGCCGAGCTAGCAGCCCT-GGGTATGGTAACAATGTAAAGGATGCAACAA 162333 Query 110056 TGGGCAATCCGCAGCCAAGCCTCTAAAGGAAAATTATTCCCATGAGGAAG--GTTCAACG 110113 ||| ||||||||||||||| | |||| | ||| | | | ||| | ||||| | Sbjct 162334 TGGACAATCCGCAGCCAAGTC-CTAAGGATGTATTGTACATCTATGGATGCAGTTCACAG 162392 Query 110114 ACTAAACGGTGATGGGTCTGGTGCTTAGCA-CAGGCTTAAGATATAGTCTAGTCCCT 110169 |||||| | | ||||| | || | || | ||||||||||||||| | |||| Sbjct 162393 ACTAAATGTGGGTGGGTATCATG---AACATGATGCTTAAGATATAGTCGGGCCCCT 162446 >seq535 Length=141774 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 23173 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 23117 >seq187 Length=679046 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 124263 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 124207 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 124423 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 124367 >seq118 Length=894290 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 432476 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 432532 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 445155 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 445099 >seq95 Length=874464 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 215369 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 215425 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 228148 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 228092 >seq42 Length=1911596 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 1671065 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 1671009 >seq10 Length=3591014 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 1319343 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 1319399 >seq5 Length=3583357 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 2754641 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 2754585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046655204740002