Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq43 104 2e-17 seq3962 96.9 2e-15 >seq43 Length=2082672 Score = 104 bits (114), Expect = 2e-17 Identities = 155/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 44125 CAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGT 44183 ||| || || || | ||| |||||| ||||| ||||| || | | || || || | | Sbjct 901286 CAAGACAAGATGTAAAGTGGACTCCTTCTGGATATTGTAGTCAGACAAGGTG-CGACCAT 901228 Query 44184 CGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTT 44243 | || |||||||| || ||||||||||||||||||||||||| || | ||||| || | Sbjct 901227 CTTCAAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGATCTGGGGGGATGCCTTCTTTGT 901168 Query 44244 CCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATC 44302 | || || || | | |||| | || | || | || ||| || |||| ||||| Sbjct 901167 CTTGGAT-TTTGGCCTTTACGTTCTCAATAGAATCAGAGGGTTCAACTTCCAGAGTAATG 901109 Query 44303 GTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| || ||||| ||||| || ||||| ||||| Sbjct 901108 GTCTTGCCAGTGAGTGTCTTGACAAAGATCTGCAT 901074 Score = 96.9 bits (106), Expect = 2e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| || | ||| | | || || || || ||| ||||| || || ||||| || Sbjct 901076 CATTCCACCACGCAGACGGAGGACAAGATGGAGGGTGGATTCCTTCTGAATATTGTAGTC 901017 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | | || | || || |||||||| |||||||||||||| | |||||| |||| Sbjct 901016 AGACAAAGTACGGCCATCTTCAAGCTGCTTACCGGCAAAGATCAATCTCTGCTGGTCTGG 900957 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | || || || ||| ||||| ||| | |||| | |||| || | || | Sbjct 900956 GGGGATGCCCTCTTTATCCTGGATCTTAGCCTTGAC-GTTCTCGATGGAATCCGAGGGCT 900898 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||||||| || || ||||| || || ||||||||||||||||| ||||| Sbjct 900897 CAACCTCCAGAGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCAT 900846 >seq3962 Length=6517 Score = 96.9 bits (106), Expect = 2e-15 Identities = 151/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTC 44187 || || || || ||| || || ||||||||||| || | | || || || |||| || Sbjct 395 ACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAAGGTGCGGC-CGTCCTC 337 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || ||||| ||||| ||||||| ||||||||||||| || | || || || ||| Sbjct 336 GAGTTGCTTGCCGGCGAAGATCAGTCGCTGCTGATCTGGGGGGATGCCCTCTTTGTCCTG 277 Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| || | | |||| | |||| || | || || ||||||| || || |||| Sbjct 276 GATCTT-AGCCTTGACGTTCTCGATGGAATCCGAGGGCTCAACCTCCAGAGTGATGGTCT 218 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || |||||||| ||||| || ||||| Sbjct 217 TGCCTGTAAGGGTCTTGACGAAAATCTGCAT 187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359962921820271