Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq3962 156 1e-32 seq275 152 1e-31 seq43 138 3e-27 seq19 123 6e-23 >seq3962 Length=6517 Score = 156 bits (172), Expect = 1e-32 Identities = 161/208 (77%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || || ||||| || || ||||| || ||||| || ||| || Sbjct 190 CAGATTTTCGTCAAGACCCTTACAGGCAAGACCATCACTCTGGAGGTTGAGCCCTCGGAT 249 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||||||||| ||||| ||||||||||| || ||||| || || ||||| Sbjct 250 TCCATCGAGAACGTCAAGGCTAAGATCCAGGACAAAGAGGGCATCCCCCCAGATCAGCAG 309 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 ||||| ||||||||||| || || ||||| || || | || |||| | || || ||| | Sbjct 310 CGACTGATCTTCGCCGGCAAGCAACTCGAGGACGGCCGCAC-CTTGTCTGACTACAACAT 368 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTT 178130 ||| |||||||| || || ||||||||| Sbjct 369 CCAGAAAGAATCCACCCTCCATCTTGTT 396 Score = 113 bits (124), Expect = 1e-19 Identities = 128/169 (76%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 177963 CTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAA 178022 || ||||| || ||||||| |||| ||||| || || ||||| |||||||| || Sbjct 1 CTGGAGGTTGAGCCCTCAGACTCCATTGAGAATGTGAAGGCTAAGATCCAGGACAAGGAG 60 Query 178023 GGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGG 178082 || ||||| || || ||||| |||| ||||||||||| || || || || ||||| | Sbjct 61 GGCATCCCCCCAGATCAGCAGAGACTGATCTTCGCCGGCAAGCAACTTGAGGATGGCCGC 120 Query 178083 ACTCTTG-CCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTT 178130 || |||| | || || ||| |||| |||||||| || || ||||||||| Sbjct 121 AC-CTTGTCTGACTACAACATCCAGAAAGAATCTACCCTCCATCTTGTT 168 >seq275 Length=398669 Score = 152 bits (168), Expect = 1e-31 Identities = 146/187 (78%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || |||||||| ||||| || ||||| |||||| | ||||| ||| ||||||| Sbjct 170539 CAGATCTTTGTGAAAACCCTCACTGGGAAAACTATCACCTTAGAGGTTGAACCCTCAGAC 170598 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | || |||||||||||| || ||||||||||| ||||||||||| || |||||||| Sbjct 170599 TCTATTGAGAACGTCAAAGCCAAAATTCAGGACAAGGAAGGAATCCCCCCAGACCAGCAG 170658 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||| || || ||||| ||||| || ||||| | || || | || || ||| | Sbjct 170659 CGTCTTATTTTTGCTGGAAAGCAGCTTGAGGATGGGCGCACACTGTCAGACTACAACATT 170718 Query 178104 CAAAAAG 178110 ||||||| Sbjct 170719 CAAAAAG 170725 >seq43 Length=2082672 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || ||||| || || ||||| || ||||| || ||| || Sbjct 900849 CAGATCTTCGTGAAGACCCTGACAGGCAAGACCATCACTCTGGAGGTTGAGCCCTCGGAT 900908 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||||||||| ||||| ||||| ||||| || ||||| || |||||||| Sbjct 900909 TCCATCGAGAACGTCAAGGCTAAGATCCAGGATAAAGAGGGCATCCCCCCAGACCAGCAG 900968 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| ||||| || ||||| |||||||| | ||| | | || || || | Sbjct 900969 AGATTGATCTTTGCCGGTAAGCAGCTTGAAGATGGCCGTACTTTGTCTGACTACAATATT 901028 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || ||||| || || |||||||| Sbjct 901029 CAGAAGGAATCCACCCTCCATCTTGT 901054 Score = 98.7 bits (108), Expect = 2e-15 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || ||||| || || || || || || || || ||| ||| || Sbjct 901077 CAGATCTTTGTCAAGACACTCACTGGCAAGACCATTACTCTGGAAGTTGAACCCTCTGAT 901136 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | || |||||||| || || || || ||||||||||| ||||| || || ||||| Sbjct 901137 TCTATTGAGAACGTAAAGGCCAAAATCCAAGACAAAGAAGGCATCCCCCCAGATCAGCAG 901196 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | ||||| || || || ||||| |||||||| | || |||| | || || || | Sbjct 901197 CGTTTGATCTTTGCTGGCAAGCAGCTTGAAGATGGTCGCAC-CTTGTCTGACTACAATAT 901255 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTG 178133 ||| || || || || | |||||||| ||| Sbjct 901256 CCAGAAGGAGTCCACTTTACATCTTGTCTTG 901286 >seq19 Length=2947477 Score = 123 bits (136), Expect = 6e-23 Identities = 124/161 (77%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || || || || ||||| || ||||| || |||||| Sbjct 340745 CAGATCTTCGTCAAGACCCTTACGGGCAAGACCATCACTCTTGAGGTCGAGCCCTCAGAT 340686 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||| ||||| || || |||||||||||||| ||||| ||||| || |||||||| Sbjct 340685 TCCATTGAGAATGTGAAGGCTAAGATTCAGGACAAGGAAGGTATCCCCCCAGACCAGCAG 340626 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGAC 178084 || || |||||||| || || ||||| |||||||| ||||| Sbjct 340625 CGTCTCATCTTCGCTGGCAAGCAGCTTGAAGATGGCAGGAC 340585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203634606966022