Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014-
06-04] 6,263 sequences; 415,781,860 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq3962 118 1e-21
seq5303 82.4 7e-11
seq43 82.4 7e-11
>seq3962
Length=6517
Score = 118 bits (130), Expect = 1e-21
Identities = 139/188 (74%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 41675 TTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATC 41734
||||||||||||||||| |||||||| || | || || ||||||||||| || || |||
Sbjct 6286 TTCTGAATGTTATAGTCAGAGAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATC 6227
Query 41735 AGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC 41794
|| ||||| ||||| | ||||| || |||||||||| |||||| ||||| |
Sbjct 6226 AGACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATTTTGGCCTTCACATTCTCA 6167
Query 41795 ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAA 41854
| | ||| | ||| ||||| | || || || || || || || ||||| || |||
Sbjct 6166 ATTGAGTCAGAGGGCTCAACCTCTAGTGTGATGGTCTTGCCGGTAAGAGTCTTGACAAAA 6107
Query 41855 ATCTGCAT 41862
||||||||
Sbjct 6106 ATCTGCAT 6099
Score = 113 bits (124), Expect = 4e-20
Identities = 165/231 (71%), Gaps = 8/231 (3%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | || ||||| || ||| || ||||| ||||| ||||| ||
Sbjct 413 CCACCACGCAGACGGAGAACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAC 354
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
| |||||| |||| ||||| |||||||||||||| ||||| ||||| || || | |||
Sbjct 353 AAGGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAAGATCAGTCGCTGCTGATCTGGGGGG 294
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG-ACACAGTG---TCGCTCGACTC 41811
| || ||| |||||| ||| || ||| |||| | | || || | |||
Sbjct 293 ATGCCCTCTTTGTCCTGGATCTTAGCCTT----GACGTTCTCGATGGAATCCGAGGGCTC 238
Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||||||| || || || || || || || ||||| ||||||||||||||
Sbjct 237 AACCTCCAGAGTGATGGTCTTGCCTGTAAGGGTCTTGACGAAAATCTGCAT 187
Score = 87.8 bits (96), Expect = 2e-12
Identities = 110/151 (73%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | || ||||| || || || ||||| ||||| ||||| ||
Sbjct 185 CCACCACGCAGACGGAGAACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCAGAC 126
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
| |||||| | || || || |||||||||||||| ||||| | ||| || || | |||
Sbjct 125 AAGGTGCGGCCATCCTCAAGTTGCTTGCCGGCGAAGATCAGTCTCTGCTGATCTGGGGGG 66
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCA 41786
| || |||||||||| ||| || |||||
Sbjct 65 ATGCCCTCCTTGTCCTGGATCTTAGCCTTCA 35
>seq5303
Length=1252
Score = 82.4 bits (90), Expect = 7e-11
Identities = 103/139 (74%), Gaps = 2/139 (1%)
Strand=Plus/Plus
Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTG-AATGTTATAGTC 41691
||||| ||||| || || | || ||||||||| || | ||| | |||||| |||||
Sbjct 290 CCGCCACCGCGCAGCCGATATACGAGATGCAGCTTGGAC-CCTGGTACAATGTTGTAGTC 348
Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751
||| || || | |||| ||||||||||| |||||| | || || |||||||| || |
Sbjct 349 GGATAGAGTTCTGCCGTCCTCGAGCTGCTTTCCGGCGTAAATGAGACGCTGTTGATCAAC 408
Query 41752 GGGAACGCTCTCCTTGTCC 41770
|| |||| |||| ||||
Sbjct 409 TGGGACGCCATCCTCGTCC 427
>seq43
Length=2082672
Score = 82.4 bits (90), Expect = 7e-11
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| ||||| | ||| || || ||||| | ||| ||||||||| || || ||||| ||
Sbjct 901300 CCACCGCGCAAACGCAAGACAAGATGTAAAGTGGACTCCTTCTGGATATTGTAGTCAGAC 901241
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
| |||||| | || || ||||||||||| || || |||| ||||| || || | |||
Sbjct 901240 AAGGTGCGACCATCTTCAAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGATCTGGGGGG 901181
Query 41756 ACGCTCTCCTTGTCCATGATTTT 41778
| || || ||||| ||||||
Sbjct 901180 ATGCCTTCTTTGTCTTGGATTTT 901158
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462267807375600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |