Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq3962 118 1e-21 seq5303 82.4 7e-11 seq43 82.4 7e-11 >seq3962 Length=6517 Score = 118 bits (130), Expect = 1e-21 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 41675 TTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATC 41734 ||||||||||||||||| |||||||| || | || || ||||||||||| || || ||| Sbjct 6286 TTCTGAATGTTATAGTCAGAGAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATC 6227 Query 41735 AGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC 41794 || ||||| ||||| | ||||| || |||||||||| |||||| ||||| | Sbjct 6226 AGACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATTTTGGCCTTCACATTCTCA 6167 Query 41795 ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAA 41854 | | ||| | ||| ||||| | || || || || || || || ||||| || ||| Sbjct 6166 ATTGAGTCAGAGGGCTCAACCTCTAGTGTGATGGTCTTGCCGGTAAGAGTCTTGACAAAA 6107 Query 41855 ATCTGCAT 41862 |||||||| Sbjct 6106 ATCTGCAT 6099 Score = 113 bits (124), Expect = 4e-20 Identities = 165/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || ||||| || ||| || ||||| ||||| ||||| || Sbjct 413 CCACCACGCAGACGGAGAACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAC 354 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | |||||| |||| ||||| |||||||||||||| ||||| ||||| || || | ||| Sbjct 353 AAGGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAAGATCAGTCGCTGCTGATCTGGGGGG 294 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG-ACACAGTG---TCGCTCGACTC 41811 | || ||| |||||| ||| || ||| |||| | | || || | ||| Sbjct 293 ATGCCCTCTTTGTCCTGGATCTTAGCCTT----GACGTTCTCGATGGAATCCGAGGGCTC 238 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||||| || || || || || || || ||||| |||||||||||||| Sbjct 237 AACCTCCAGAGTGATGGTCTTGCCTGTAAGGGTCTTGACGAAAATCTGCAT 187 Score = 87.8 bits (96), Expect = 2e-12 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || ||||| || || || ||||| ||||| ||||| || Sbjct 185 CCACCACGCAGACGGAGAACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCAGAC 126 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | |||||| | || || || |||||||||||||| ||||| | ||| || || | ||| Sbjct 125 AAGGTGCGGCCATCCTCAAGTTGCTTGCCGGCGAAGATCAGTCTCTGCTGATCTGGGGGG 66 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCA 41786 | || |||||||||| ||| || ||||| Sbjct 65 ATGCCCTCCTTGTCCTGGATCTTAGCCTTCA 35 >seq5303 Length=1252 Score = 82.4 bits (90), Expect = 7e-11 Identities = 103/139 (74%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTG-AATGTTATAGTC 41691 ||||| ||||| || || | || ||||||||| || | ||| | |||||| ||||| Sbjct 290 CCGCCACCGCGCAGCCGATATACGAGATGCAGCTTGGAC-CCTGGTACAATGTTGTAGTC 348 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 ||| || || | |||| ||||||||||| |||||| | || || |||||||| || | Sbjct 349 GGATAGAGTTCTGCCGTCCTCGAGCTGCTTTCCGGCGTAAATGAGACGCTGTTGATCAAC 408 Query 41752 GGGAACGCTCTCCTTGTCC 41770 || |||| |||| |||| Sbjct 409 TGGGACGCCATCCTCGTCC 427 >seq43 Length=2082672 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| | ||| || || ||||| | ||| ||||||||| || || ||||| || Sbjct 901300 CCACCGCGCAAACGCAAGACAAGATGTAAAGTGGACTCCTTCTGGATATTGTAGTCAGAC 901241 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | |||||| | || || ||||||||||| || || |||| ||||| || || | ||| Sbjct 901240 AAGGTGCGACCATCTTCAAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGATCTGGGGGG 901181 Query 41756 ACGCTCTCCTTGTCCATGATTTT 41778 | || || ||||| |||||| Sbjct 901180 ATGCCTTCTTTGTCTTGGATTTT 901158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462267807375600