Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq946 185 9e-42 >seq946 Length=1044653 Score = 185 bits (204), Expect = 9e-42 Identities = 441/659 (67%), Gaps = 6/659 (1%) Strand=Plus/Minus Query 16676 TGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCC 16735 ||||| |||| |||||||| ||||| ||||| || || ||||| | || || | |||| Sbjct 24358 TGGTACTCGCCGACGCGTTTCTCGAAGAAGTTCGTCTTCCCCTCCAACGAGATTTGCTCC 24299 Query 16736 ATGAAATCAAAAGGATTAGTAGCTGAAA-ATATTTTAGAGTACCCCAGTTCGGCGATTAA 16794 ||||||||||| ||||| | ||| | | || | || | || || | | | Sbjct 24298 ATGAAATCAAATGGATTCTGA-CTGTTCCACAACTTGTCGCACTCGAGCTCAACCAACAG 24240 Query 16795 TCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGA-C 16853 || ||| || ||||||||||| ||||| ||| | || || ||||| || | | | Sbjct 24239 TCGATCGGCGACAAATTCTATGTATTGTTTCATGAGATCACAATTCATACCGAGCATCGC 24180 Query 16854 GTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATAC 16913 | || | || |||||| || | || ||||| || |||| || | || || Sbjct 24179 GCACGGTAA-AGCTTCGGTGAGGAACTCCTGCTCGATCGCAACGGCGTTGCGGATGATCT 24121 Query 16914 TAGCAACTCGTTCCTCGGACGGTGTATGTT-TAAGATGTTTAAACATCAGACATGCGAAA 16972 | | || || |||||||| | || |||| ||| | ||||| || || |||||| Sbjct 24120 CATAGATCCGCTCTACGGACGGTTTCTGGACTAAG-TGTCTGAACATAAGGCAAGCGAAA 24062 Query 16973 TCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATC 17032 ||| ||| | ||||||||||| || || |||||| || ||||| ||||||||| Sbjct 24061 TCGGTATGGAGGCCCTCGTCTCTCGAAATTAGCTCGTTACTGAAAGTCAATCCGGGCATC 24002 Query 17033 TTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCG 17092 || |||||||| | ||| ||||||| ||||||| ||| ||||| || || ||| Sbjct 24001 AGACCGCGTTTCTTGAGCCAGAATATCGAAGCGAACGCTCCACTGAAGAAAATCCCTTCG 23942 Query 17093 ACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTC 17152 || | || ||||| | | ||||| |||| || || | | || | ||||| ||| Sbjct 23941 ACCGCCGCGAACGCCACGACACGTTCTCCGTAGGTAGCATTCTGATTCCCGATCCAATTC 23882 Query 17153 TGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAATTTC 17212 | |||| || ||||| | ||| ||||| ||| || || |||||| | |||| | Sbjct 23881 AGGGCCCAATCAGCTTTCTTCTTGATGCATGGCATGGTCTCGATGGCCCTGAATAGATGA 23822 Query 17213 TCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGT 17272 || |||| | || | || || |||| || || | ||||||||| || || Sbjct 23821 TCACGTTCCATCGGATCCGTGATGTAGGTATTGAGCAGCAACGAGTACATTTCCGAATGA 23762 Query 17273 ATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTC 17331 ||||||||||| | || || ||||| ||||| || ||||||| | ||||| || Sbjct 23761 ATGTTCTCCATCATGACTTGGAAGCCGTAGAAGCAGCGAGCTTCCGTGACCTGAACCTC 23703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517531296333480