Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq946 163 3e-35 >seq946 Length=1044653 Score = 163 bits (180), Expect = 3e-35 Identities = 429/648 (66%), Gaps = 10/648 (2%) Strand=Plus/Minus Query 15914 TGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCC 15973 ||||| || | |||||||| ||||||||||| || || ||||| || || || | ||| Sbjct 24358 TGGTACTCGCCGACGCGTTTCTCGAAGAAGTTCGTCTTCCCCTCCAACGAGATTTGCTCC 24299 Query 15974 ATAAAATCAAAGGGATTAGTAGCTGAAA-ATATCTTAGAGTACCCCAGTTCCGTAACTAA 16032 || |||||||| ||||| | ||| | | ||| | || | || || ||| || Sbjct 24298 ATGAAATCAAATGGATTCTGA-CTGTTCCACAACTTGTCGCACTCGAGCTC---AACCAA 24243 Query 16033 ---TCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAG 16089 || ||| || ||||||||||| ||||| ||| | || ||||| || || | | Sbjct 24242 CAGTCGATCGGCGACAAATTCTATGTATTGTTTCATGAGATCACAATTCATACCGAGCA- 24184 Query 16090 TCGTAC-CGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGA 16148 ||| | ||| | ||||| || | || | || || ||| |||| || | |||| Sbjct 24183 TCGCGCACGGTAAAGCTTCGGTGAGGAACTCCTGCTCGATCGCAACGGCGTTGCGGATGA 24124 Query 16149 TATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGA 16208 | || | || | | |||||| | ||| || |||| | ||||| || || |||| Sbjct 24123 TCTCATAGATCCGCTCTACGGACGGTTTCTGGACTAAGTGTCTGAACATAAGGCAAGCGA 24064 Query 16209 AGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCA 16268 | ||| ||| || || |||||||| || || ||||| ||||| || || |||| Sbjct 24063 AATCGGTATGGAGGCCCTCGTCTCTCGAAATTAGCTCGTTACTGAAAGTCAATCCGGGCA 24004 Query 16269 TTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCT 16328 | || |||||||| | ||||||||||| ||| || | || ||||| || || | Sbjct 24003 TCAGACCGCGTTTCTTGAGCCAGAATATCGAAGCGAACGCTCCACTGAAGAAAATCCCTT 23944 Query 16329 CAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATT 16388 | || | || || || | | ||||| |||| ||||||| | ||| | ||||| | Sbjct 23943 CGACCGCCGCGAACGCCACGACACGTTCTCCGTAGGTAGCATTCTGATTCCCGATCCAAT 23884 Query 16389 TCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAATT 16448 || | |||| || ||||| | || || || ||| || || |||||| | || | | Sbjct 23883 TCAGGGCCCAATCAGCTTTCTTCTTGATGCATGGCATGGTCTCGATGGCCCTGAATAGAT 23824 Query 16449 TCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGT 16508 || |||| ||| | || || |||| | ||| || ||||||||| || | Sbjct 23823 GATCACGTTCCATCGGATCCGTGATGTAGGTATTGAGCAGCAACGAGTACATTTCCGAAT 23764 Query 16509 GTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCG 16556 | |||||||| || | || || || |||||||| ||||| |||| Sbjct 23763 GAATGTTCTCCATCATGACTTGGAAGCCGTAGAAGCAGCGAGCTTCCG 23716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511400265784520