Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq614 307 1e-78 seq946 138 1e-27 >seq614 Length=536467 Score = 307 bits (340), Expect = 1e-78 Identities = 1190/1860 (64%), Gaps = 26/1860 (1%) Strand=Plus/Plus Query 52799 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 52858 ||||| | ||||| ||||| | || ||||| ||||| | | |||||||| || Sbjct 529848 TTGTCGACAGTGAACTGAATCGCCTGGGCGGCGGGCTTCGTTCTCAAGTAGTACATCCCG 529907 Query 52859 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGA 52918 ||||| | |||||| |||| ||||| |||||||| || || || | | | Sbjct 529908 GTTTTCAAACCGAGTTTCCAGCCGTAGAAATGCATCGACGTGAGCTTCCCGAAGTTGGTC 529967 Query 52919 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 52978 || || | ||||| |||| |||||| || ||||||||||| || || | ||| || ||| Sbjct 529968 TCGGCGAAGTGGATGTTCAGAGATTGGCTCTGATCGATGAACGCCCCACGGTCAGCCGCC 530027 Query 52979 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCT 53038 ||||| ||||| |||| || || | |||||||| || || | | | || | | Sbjct 530028 ATTTTGATGATGTTCTTCTGAGGCAGTTCCCAAACGGTCCGGTAGAGTTGTTTCAATTTA 530087 Query 53039 TCTGGAAGGTTTGTATTCTGAATAGATCCACCAT--CTACC-ATAATCCTATTCTTGATC 53095 || || | | |||||| | || ||| | ||| | | || | ||||| ||| Sbjct 530088 TCAGGGATATCAAGATTCTGCACGGA---ACCGTTGCTAGCGACAAGCTCGTTCTTCATC 530144 Query 53096 TCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGA 53155 || ||||| | ||||| | | | | ||||| || |||| || | ||| Sbjct 530145 GTTTCGTTCCAGAGGCCCAAGTCGGTGAGATCCTTCAGGAGGTGGTGATTGACGATTTGG 530204 Query 53156 AATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCA 53215 ||||| || || | |||| | | || | || || || ||||| || | ||||| Sbjct 530205 AATTCACCGGAGAGAACTCGTCTGGCATACACGTTGCTCGTGTACGGCTCAATGGACTCG 530264 Query 53216 TTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTT 53275 || || || | || ||||| |||||||| || ||||| || |||| || | |||||| Sbjct 530265 TTGTTGCCGAGGATCTGAGCCGTTGATGCTGTGGGCATGGGCGCCAGCAGCAGACTATTC 530324 Query 53276 CTAAGACCGTA-TGTTCTGATTTTATCTTTTA-GAGGTTCCCAATTCCAAAGATCCGACG 53333 | | |||| || | |||||| ||| | || ||||| | ||| || || || | Sbjct 530325 CGGATTCCGTGCTGGGC-GATTTT-TCTCCGAAGACCGTCCCAGTCCCAGAGGTCGGATG 530382 Query 53334 GTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATG 53393 | || || ||||| || || | || | || | |||| Sbjct 530383 GCTTGACATTCCACATGTCATGCTGCAGAATCCCCTTTGAGACGGGGCAGCCGGCGTATG 530442 Query 53394 TATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAA 53453 | ||||| | ||| | | || || || || || || || || || ||| || |||| | Sbjct 530443 TCTCGTAGGTTCCGTGGATTTCCGCGAGCTCGCAGCTTGCTTCCAACGCAGCGAAATAGA 530502 Query 53454 TGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTA 53513 ||||||||||||| || | || ||||| |||||| |||| || || ||||| | Sbjct 530503 TGGTTTCGAAGATTTTGCTGTTCAGATCCATCGCTTCCGGGCTGTCGAAAGGATACCGCA 530562 Query 53514 AGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTAT 53573 || || ||||| || || | || || ||||| || ||||| |||| ||||||||| | Sbjct 530563 TCAGGATGAACGCATCGGCCAGACCCTGGACACCGATTCCGATCGGTCGATGTCTCTTGT 530622 Query 53574 TAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTC 53633 | ||| ||||| || | ||||| || || || || || ||||| |||||||||| Sbjct 530623 TGCTTCGTTCGGCTTCCGGCACGGGATAGTAGTTGATGTCGATGATTTTGTTGAGGTTTC 530682 Query 53634 TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCATCTATTACAA 53693 || ||||| ||| || ||| | | || || || || || || | Sbjct 530683 GCGTGATGGCTTTGGTCACTTCTCTCAATCTCTCGAAGTCGAAAGCGCCGTCGTGCACGA 530742 Query 53694 ACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATT 53753 | ||| | || | || |||| || || || || | ||| | | || || | Sbjct 530743 AGCGGTTGAGGGCCACCGAAGCCAAGTTGCAGACCGCGATCTCGTCTGGCGACGAGTACT 530802 Query 53754 GTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCT 53813 | || || ||||||||||| ||||||||||| || | ||| ||||| || |||| Sbjct 530803 CGACGATTTCTGTGCAAAGATTCGAGCACTTGATGGTCCCGAGATTCTGTTGGTTGCTCT 530862 Query 53814 TTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTA 53873 | ||| || || ||||| || || ||| | || || || ||||| ||||| ||| | Sbjct 530863 TGCGGTTGCAAGCGTCCTTGTACAGCATGTACGGGGTCCCGGTTTCGATCTGACTTTCCA 530922 Query 53874 TAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGT 53933 |||| | ||| | | || | || |||| | ||| | || Sbjct 530923 GGATCGTATACCACAGTTTCTGGGCGTCGATCTGGCGGATGTAACGGCCTTCCTTCTC-- 530980 Query 53934 ATAGT----GTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCC---AATCCAGGA 53986 |||| ||| | || || |||||||| ||||| |||| | || || Sbjct 530981 ATAGCCCTCGTAGAGTTTC--TCGAACTCGTCGCCCCACG---TGTCACTGAGGCCCGGG 531035 Query 53987 CATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGA 54046 || || |||||||| | |||||||| |||| | | || |||||||| || || Sbjct 531036 CACGTATTGGGACACATGAGCGACCACTTGCCGTTTTGTTCAACGCGTTTCATGAACAGG 531095 Query 54047 TCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTC 54106 || |||||||| || || || || || | || | || ||| | || || || Sbjct 531096 TCCGGAATCCACAGGGCGTAGAAGAGGTCGCGGGCACGCATCTCTTCGATGCCAGTGTTT 531155 Query 54107 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATA 54166 || ||||| | |||| | | |||||| |||||||| || | || |||| | | Sbjct 531156 TTACGGAGATCCAAGAACTCGAAAATATCGCCGTGCCACGGCTCGAGATAGATGGCGAAA 531215 Query 54167 ACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 54226 | || || |||||||| || ||||| || | ||| | ||||||||| || |||||| | Sbjct 531216 GCGCCGGGTCGTTTGTTGCCGCCCTGGTCGACGTAGCGAGCGGTGTTGTTGAAAACTCGC 531275 Query 54227 AACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCA 54286 | ||| |||| ||||| || || | || || ||||||| ||| || || | | Sbjct 531276 AGCATGGGAACGATACCGTTCGACGTCCCGTTCGTCCCGGCGATGTAAGAGCCCGTAGGT 531335 Query 54287 CGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGT 54346 ||||| | || || ||| || || || || ||| ||||| | |||||| | Sbjct 531336 CGAATGCAATGGATGTTTACACCAATACCACCGGCGGATTTCGAGATCAGAGCGCATTGG 531395 Query 54347 TTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 54406 | | ||| || ||||| || || ||| ||||||| |||| | || || |||||| Sbjct 531396 CTCAGCGTTTCGTAGATCCCTTCGATAGAATCATCCTTCATTGTCAGCAGGAAACAGGAG 531455 Query 54407 GACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCAT 54466 || || | || | ||| ||||| || || | || ||| ||||| || |||||| Sbjct 531456 CTCAACTGTGGGCGGCAAGTACCCGCGTTGAACAGCGTCGGACTGGCGTGGGTGAACCAT 531515 Query 54467 TTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCC-CATTGATGAATTCC 54525 || || | | ||||| |||||||| || | || | || || | |||||||| Sbjct 531516 TTCTCGCTCATGAAGTTGTAGGTCTCGATGGCGGCCTCCACGTCGTCACCG-TGAATTCC 531574 Query 54526 TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAG 54585 || | || ||||| | ||||||||||||||| || ||||| || || ||||| || Sbjct 531575 GACCGAAACGCGCATCAGCATGTGCTGAGGTCTCTCGACGATTTTACCGTCGATTTTTAG 531634 Query 54586 CAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 54645 | ||||||| || | ||| || || || |||||||| ||||| | ||||| Sbjct 531635 GAGGTAGGATCGCTCGAGGGTTCGGAATCCGAAGTAGTTGTAGTTGAAGTCCCTATCGTA 531694 >seq946 Length=1044653 Score = 138 bits (152), Expect = 1e-27 Identities = 440/679 (65%), Gaps = 15/679 (2%) Strand=Plus/Minus Query 23831 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 23890 ||| ||||| ||| ||||| || || || ||||| ||||| || || || || || || Sbjct 24374 CATTACTCCGGCTTTCTGGTACTCGCCGACGCGTTTCTCGAAGAAGTTCGTCTTCCCCTC 24315 Query 23891 TAATGATATATTTTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCC 23950 || || || | ||||||||||| ||||||| | || | | | | | | Sbjct 24314 CAACGAGATTTGCTCCATGAAATCAAATGGATTCTGACTGTTCCACAACTTGTCGCACTC 24255 Query 23951 CAATTCAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATT 24010 | ||| | || || ||| |||||||| || || ||| |||||| | |||||||| Sbjct 24254 GAGCTCAACCAACAGTCGATCGGCGACAAATTCTATGTATTGTTTCATGAGATCACAATT 24195 Query 24011 CATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGC 24070 ||| || | | || | ||| | || || || || || || || | || || Sbjct 24194 CATACCGAGCATCGCGCACGGTAAAGCTTCGGTGAGGAACTCCTGCTCGATCGCAACGGC 24135 Query 24071 GTC-----TGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTA 24125 || || | | ||||||| ||| | |||| | | ||| ||| | Sbjct 24134 GTTGCGGATGATCTCATAGATCCGC-----TCTACGGACGGTTTCTGGACTAAGTGTCTG 24080 Query 24126 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 24185 ||||| | || ||||||||| || || ||||||||||| ||||| ||||| Sbjct 24079 AACATAAGGCAAGCGAAATCGGTATGGAGGCCCTCGTCTCTCGAAATTAGCTCGTTACTG 24020 Query 24186 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 24245 || || | ||||||||| || || || || || ||||| ||||| || || || | |||| Sbjct 24019 AAAGTCAATCCGGGCATCAGACCGCGTTTCTTGAGCCAGAATATCGAAGCGAACGCTCCA 23960 Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTG 24305 |||||||| ||||| || ||||| || || | | | |||||| || || | Sbjct 23959 CTGAAGAAAATCCCTTCGACCGCCGCGAACGCCACGACACGTTCTCCGTAGGTAGCATTC 23900 Query 24306 TCAT---GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 24362 | || ||||| || | |||||||| || ||||| || | || ||||| ||||| Sbjct 23899 TGATTCCCGATCCAATTCAGGGCCCAATCAGCTTTCTTCTTGATGCATGGCATGGTCTCG 23840 Query 24363 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 24422 || || | || |||| | ||| | ||| | | || |||| | || | | Sbjct 23839 ATGGCCCTGAATAGATGATCACGTTCCATCGGATCCGTGATGTAGGTATTGAGCAGCA-A 23781 Query 24423 CTA-TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGC 24481 | | |||||||||||||||||||| || || | ||| || |||||||| || | ||| Sbjct 23780 CGAGTACATTTCCGAATGAATGTTCTCCATCATGACTTGGAAGCCGTAGAAGCAGCGAGC 23721 Query 24482 CTCGGTAATCTGTACTTCT 24500 || || | ||| || ||| Sbjct 23720 TTCCGTGACCTGAACCTCT 23702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593705191019280