Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq2156 122 7e-23 >seq2156 Length=2198910 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || ||||| || | ||| |||| ||||| || ||||||||||| || || ||||| | | Sbjct 1777315 CCTCCTCGGAGACGGAGAACCAAGTGCAAGGTCGACTCCTTTTGGATATTGTAGTCGGAC 1777256 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | |||| || |||||||| || || |||| || | |||||||||| || Sbjct 1777255 AGCGTGCGACCGTCTTCGAGCTGTTTACCAGCGAAAATCAGACGCTGCTGGTCCGGTGGG 1777196 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| ||||||| || || | ||| || ||| |||||| Sbjct 1777195 ATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTTTCGATCGTGTCAGAGGGCTCGACC 1777136 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || || |||||||| |||| || ||||| || || ||||| Sbjct 1777135 TCCAGAGTGATCGTCTTGCCCGTTAGGGTCTTGACGAAAATCTGCAT 1777089 Score = 98.7 bits (108), Expect = 8e-16 Identities = 161/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| ||||| || | ||| || | || | || ||||||||||| ||||| ||||||| Sbjct 1775620 TTCCTCCTCGGAGGCGGAGGACGAGGTGGAGCGTCGACTCCTTTTGGATGTTGTAGTCCG 1775561 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 |||||| || |||| || |||||||| || || | || || | ||||| ||| | Sbjct 1775560 AAAGGGTTCGGCCGTCTTCAAGCTGTTTTCCAGCGAAGATCAGACGTTGCTGATCCGGAG 1775501 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | || || ||||| ||| || ||||| | | | || || || |||| Sbjct 1775500 GGATTCCCTCTTTGTCCTGGATTTTAGCCTTCACATTCTCAATGGTGTCGGCGAGCTCGA 1775441 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 || | || ||||| |||||||| | |||||||| || ||||||||||| Sbjct 1775440 CATCGAGCGTGATGGTTTTGCCGGTGAGAGTTTTGACGAAGATTTGCATTTT 1775389 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || ||||| | ||||| | ||| | ||||||||||| || || || || || Sbjct 1775848 TTCCTCCGCGCAGACGAAGCACGAGATGGAGCGTGGACTCCTTCTGGATATTGTAATCGC 1775789 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 |||||| | ||||||| || || ||||| || | || |||| ||||||||| || Sbjct 1775788 TGAGGGTTCGTCCGTCCTCAAGTTGCTTGCCAGCGAAGATCAGTCGCTGCTGGTCGGGGG 1775729 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | ||| |||||||| |||||| ||||| | ||| || || | ||| Sbjct 1775728 GAATGCCCTCCTTGTCTTGGATCTTGGCCTTCACGTTTTCGATCGTGTCGGACGACTCGA 1775669 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 |||| || || ||||| ||||| | ||| || || || || |||||| Sbjct 1775668 CCTCCAACGTGATCGTCTTTCCGGTCAGCGTCTTCACGAAGATCTGCATT 1775619 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| |||| ||||| ||||| ||||| || ||||| ||||| | | Sbjct 1777087 CCTCCGCGAAGACGGAGGACCAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAC 1777028 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || | ||||||| ||||||||||| || | || |||| ||| || ||| || Sbjct 1777027 AACGTGCGACCGTCCTCAAGCTGTTTGCCAGCGAAGATGAGTCGCTGTTGATCCGGAGGA 1776968 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| |||||| ||| || | ||| || || || || Sbjct 1776967 ATTCCCTCCTTGTCTTGGATCTTGGCTTTGACGTTTTCGATCGTGTCGGAAGGTTCGACC 1776908 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || || |||||||| || | || ||||| || || ||||| Sbjct 1776907 TCCAACGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 1776861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422247821566076