Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq946 239 5e-58 seq2156 163 3e-35 >seq946 Length=1044653 Score = 239 bits (264), Expect = 5e-58 Identities = 433/624 (69%), Gaps = 12/624 (2%) Strand=Plus/Plus Query 116819 CAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAAC 116878 || ||||| ||||| | || || || |||||||||||||| || || ||||||||| Sbjct 23700 CAAGAGGTTCAGGTCACGGAAGCTCGCTGCTTCTACGGCTTCCAAGTCATGATGGAGAAC 23759 Query 116879 GTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAG 116938 | || ||||||||||| ||| || || | || ||| | | | || || | ||| Sbjct 23760 ATTCATTCGGAAATGTACTCGTTGCTGCTCAATACCTACAT-CACGGATCCGATG-GAAC 23817 Query 116939 CTC--CGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGG 116996 | | | | || | ||||||||||| ||||| ||| |||| |||| || || |||| Sbjct 23818 GTGATCATCTATTCAGGGCCATCGAGACCATGCCATGCATCAAGAAGAAAGCTGATTGGG 23877 Query 116997 CGCTGCGCTGGATCGCCGG---CAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCG 117053 | ||| ||||||| || |||| | || ||| ||| || || | ||||| |||| Sbjct 23878 CCCTGAATTGGATCG--GGAATCAGA-ATGCTACCTACGGAGAACGTGTCGTGGCGTTCG 23934 Query 117054 CGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAAC 117113 |||| ||||| || | ||||| || ||||| | ||||| ||||||||||||| Sbjct 23935 CGGCGGTCGAAGGGATTTTCTTCAGTGGAGCGTTCGCTTCGATATTCTGGCTCAAGAAAC 23994 Query 117114 GCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGC 117173 |||| || |||||||| |||||||||| |||||||| || || || |||||||| || | Sbjct 23995 GCGGTCTGATGCCCGGATTGACTTTCAGTAACGAGCTAATTTCGAGAGACGAGGGCCTCC 24054 Query 117174 ATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCG 117233 || ||| || || || | |||||| || || || ||| |||| || | ||| Sbjct 24055 ATACCGATTTCGCTTGCCTTATGTTCAGACACTTAGTCCAGAAACCGTCCGTAGAGCGGA 24114 Query 117234 TCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGC 117293 || |||||| || | |||| || || ||||||||| |||||||||||||| | | Sbjct 24115 TCTATGAGATCATCCGCAACGCCGTTGCGATCGAGCAGGAGTTCCTCACCGAAGCTTTAC 24174 Query 117294 CGGTGCG-TCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCC 117352 | ||||| |||| || | ||||| || ||| |||||||| || || |||||| Sbjct 24175 C-GTGCGCGATGCTCGGTATGAATTGTGATCTCATGAAACAATACATAGAATTTGTCGCC 24233 Query 117353 GACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGCTGGAC 117412 || | ||| || | ||||| | ||| |||| | |||| | || || | || Sbjct 24234 GATCGACTGTTGGTTGAGCTCGAGTGCGACAAGTTGTGGAACAGTCAGAATCCATTTGAT 24293 Query 117413 TTTATGAACCTCATCTCCTTGGAG 117436 || ||| | | ||||| |||||| Sbjct 24294 TTCATGGAGCAAATCTCGTTGGAG 24317 Score = 107 bits (118), Expect = 2e-18 Identities = 164/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 || || ||||| || |||||||| || |||||| | ||||| || |||| ||||| Sbjct 23359 GAACCTCTGCTCCGAGAGAACCCTAATCGATTCGTGCTGTTCCCGATCGAATATCCGGAT 23418 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || ||| | |||||||| || || |||| ||||||||||| | |||||| || || || Sbjct 23419 ATCTGGAGAATGTACAAGAAAGCTCAGGCTTCGTTCTGGACAGCCGAGGAAGTTGATCTC 23478 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCAC 116755 ||||| | | |||||| | ||| | | || | | |||||||||||| Sbjct 23479 GGGAAGGATATGGCAGACTGGCACAAAATGAGCTCTCAGGAACAAGAGTTCATCAAGCAC 23538 Query 116756 GTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAG 116809 | |||| |||||||| || || || || ||||| || ||||| |||||| Sbjct 23539 ATCTTGGCTTTTTTCGCAGCATCGGATGGAATTGTCAATGAAAATCTCGTCGAG 23592 >seq2156 Length=2198910 Score = 163 bits (180), Expect = 3e-35 Identities = 168/217 (77%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| |||||||| || || ||||| | || |||||| | || Sbjct 1776633 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACGATCACGCTTGAAGTCGAACCGTCC 1776692 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| ||||||| || || ||||||||||| | ||||| Sbjct 1776693 GACACGATCGAGAACG-TGAAGGCGAAAATTCAGGATAAGGAGGGCATCCCGCCCGACCA 1776751 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || ||||||| ||| ||||||||||| || |||| ||||||||| |||||||| Sbjct 1776752 ACAGCGGCTCATCTTCGCTGGCAAACAGCTCGAGGACGGTCGCACCCTCCTGGACTACAA 1776811 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 |||||||||||| |||| || ||||| ||| ||||| Sbjct 1776812 CATCCAGAAGGAATCCACCCTCCATCTGGTGCTGCGC 1776848 Score = 161 bits (178), Expect = 1e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 ||||||||||| ||||| ||||| ||||| |||||||||||||| |||| ||||| | Sbjct 1775389 AAAATGCAAATCTTCGTCAAAACTCTCACCGGCAAAACCATCACGCTCGATGTCGAGCTC 1775448 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 |||||| | | | | | |||| ||||| | ||||||||||| ||||| |||| Sbjct 1775449 GCCGACACCATTGAGAATGTGAAGGCTAAAATCCAGGACAAAGAGGGAATCCCTCCGGAT 1775508 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 |||||||| || |||| ||| || |||||||| || |||| || ||||| |||||| Sbjct 1775509 CAGCAACGTCTGATCTTCGCTGGAAAACAGCTTGAAGACGGCCGAACCCTTTCGGACTAC 1775568 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||| |||||| | ||||| || || || Sbjct 1775569 AACATCCAAAAGGAGTCGACGCTCCACCTCGT 1775600 Score = 161 bits (178), Expect = 1e-34 Identities = 167/214 (78%), Gaps = 5/214 (2%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| || || |||||||||||| |||||||| ||||||| || ||| | Sbjct 1775847 AATGCAGATTTTCGTCAAGACCCTCACGGGCAAA-CCATCACCCTCGACGTGGAGGCCTC 1775905 Query 40749 CGACA-GCGTGCAAACGCTCAAGGA--AAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 ||||| | || ||||| |||||| |||| | | |||||||||||||| || | || Sbjct 1775906 CGACACGATTGAAAACG-TCAAGGTCCAAAACTCCAGGACAAAGAGGGCATTCCTCCCGA 1775964 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||| || || | |||| ||| || || || || || |||| ||||| |||| |||||| Sbjct 1775965 CCAACAGCGTTTGATCTTCGCTGGAAAGCAACTCGAAGACGGTCGCACGCTCAGCGACTA 1776024 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 |||||||||||| ||| | || |||||||| ||| Sbjct 1776025 CAACATCCAGAAAGAGTCGACCCTGCATCTGGTG 1776058 Score = 158 bits (174), Expect = 1e-33 Identities = 163/211 (77%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| || ||||| ||||| |||| |||||||| || Sbjct 1777712 ATGCAAATCTTCGTGAAGACTCTCACTGGAAAAACGATCACGCTCGAGGTCGAAGCGTCC 1777771 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | || | ||||| | ||||| ||||| ||||| | ||||| Sbjct 1777772 GACACCATCGAGAACG-TGAAAGCCAAAATCCAGGACAAGGAGGGTATCCCGCCCGACCA 1777830 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || |||||||| | ||| || ||||||||||| |||| ||||| || | ||||||||| Sbjct 1777831 ACAGCGACTCATTTTCGCTGGAAAACAGCTGGAGGACGGTCGCACTCTGAGCGACTACAA 1777890 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 |||||| |||||| | || || ||||| ||| Sbjct 1777891 CATCCAAAAGGAGTCGACACTCCATCTCGTG 1777921 Score = 147 bits (162), Expect = 2e-30 Identities = 165/218 (76%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || || ||||||||||| || ||||| |||||| |||| ||||| || | Sbjct 1776404 AATGCAGATTTTTGTGAAAACGCTCACCGGAAAAACAATCACCCTCGAGGTCGAGCCCTC 1776463 Query 40749 CGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 ||||| | | | ||||| |||||| || |||| ||||| || || || || | || | Sbjct 1776464 CGACACCATCGAAAACG-TCAAGGCCAAGATTCAGGACAAGGAAGGAATTCCGCCTGATC 1776522 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 | || ||||| |||| ||| |||||||| || || || | || |||||| ||| |||| Sbjct 1776523 AACAGCGACTGATCTTCGCCGGCAAACAACTCGAAGAAGGACGAACCCTCTCCGATTACA 1776582 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 ||||||||||||| | ||||| || || ||| | ||| Sbjct 1776583 ACATCCAGAAGGAATCGACGCTTCACCTGGTGCTCCGC 1776620 Score = 147 bits (162), Expect = 2e-30 Identities = 160/210 (76%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||||||||| || ||||| | || |||||| | || Sbjct 1776861 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACGTTGGAGGTCGAACCTTCC 1776920 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | ||||| |||| | || || | ||||| ||||| || || |||| || Sbjct 1776921 GACACGATCGAAAACG-TCAAAGCCAAGATCCAAGACAAGGAGGGAATTCCTCCGGATCA 1776979 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || |||||||||| ||| ||||||||||| || |||| ||||| | ||||||||| Sbjct 1776980 ACAGCGACTCATCTTCGCTGGCAAACAGCTTGAGGACGGTCGCACGTTGTCCGACTACAA 1777039 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| |||| |||||||| || Sbjct 1777040 CATCCAGAAGGAATCCACCCTGCATCTGGT 1777069 Score = 145 bits (160), Expect = 8e-30 Identities = 161/212 (76%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| || ||||| || || || || ||||| | || ||||| | | Sbjct 1775619 AATGCAGATCTTCGTGAAGACGCTGACCGGAAAGACGATCACGTTGGAGGTCGAGTCGTC 1775678 Query 40749 CGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 ||||| | | ||||| | |||| || || | ||||| |||||||| ||| | |||| Sbjct 1775679 CGACACGATCGAAAACG-TGAAGGCCAAGATCCAAGACAAGGAGGGCATTCCCCCCGACC 1775737 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| ||||| |||| ||| ||||| || || || |||| || ||||||| ||| |||| Sbjct 1775738 AGCAGCGACTGATCTTCGCTGGCAAGCAACTTGAGGACGGACGAACCCTCAGCGATTACA 1775797 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 | |||||||||||| ||||||| ||||| ||| Sbjct 1775798 ATATCCAGAAGGAGTCCACGCTCCATCTCGTG 1775829 Score = 131 bits (144), Expect = 2e-25 Identities = 155/209 (74%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| | ||||| ||||||||||| |||| || |||||| | Sbjct 1778168 ATGCAGATTTTCGTCAAAACCTTGACGGGAAAAACCATCACTCTCGAAGTAGAAGCCTCT 1778227 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| ||||| | ||||| || || |||||| | |||||| Sbjct 1778228 GACACCATCGAGAATGTCAAGGCCAAAATCCAAGACAAGGAAGGAATCCCC-CCGACCAG 1778286 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| || || | ||| |||||||| || || |||| || ||| | || |||||| Sbjct 1778287 CAACGTCTTATTTTCGCTGGCAAACAACTCGAAGACGGCCGTACCTTGTCGGATTACAAC 1778346 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||| || | ||||| ||||| || Sbjct 1778347 ATCCAGAAAGAATCTACGCTCCATCTCGT 1778375 Score = 122 bits (134), Expect = 9e-23 Identities = 155/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| || || || || || ||||| ||||| |||| || || | | Sbjct 1776176 AATGCAGATCTTCGTGAAGACACTGACTGGAAAAACAATCACGCTCGAAGTGGAGCCTTC 1776235 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | |||| |||||| ||||| | ||||| |||||||| || | |||| Sbjct 1776236 GGACACGATCGAGAACG-TCAAGGCGAAAATCCAAGACAAGGAGGGCATTCCTCCCGACC 1776294 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| | | |||| ||| || || || || || |||| ||||| |||| |||||||| Sbjct 1776295 AGCAGAGGTTGATCTTCGCCGGGAAGCAACTCGAGGACGGTCGCACGCTCAGCGACTACA 1776354 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||| ||||| ||| |||| |||||||| || Sbjct 1776355 ACATTCAGAAAGAGTCCACTCTGCATCTCGT 1776385 Score = 111 bits (122), Expect = 2e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || ||||| || || ||||||||| | || ||||| | | Sbjct 1777940 ATGCAGATCTTTGTGAAGACCCTCACCGGGAAGACCATCACCCTGGAAGTCGAGCCGTCG 1777999 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| ||| || | ||||| ||||| || ||| | ||||| Sbjct 1778000 GACACCATCGAGAACG-TAAAGGCAAAGATCCAGGACAAGGAGGGGATTCCCCCAGACCA 1778058 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || || | ||| ||||| ||||| || || | ||||| | | ||| ||||| Sbjct 1778059 GCAGCGTCTTATTTTCGCTGGCAAGCAGCTCGAGGATGGTCGCACATTGAGCGATTACAA 1778118 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||| || ||| |||| || || || || Sbjct 1778119 CATCCAAAAAGAGTCCACCCTCCACCTGGT 1778148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515204960629360