Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq2156 140 4e-28 seq2090 100 3e-16 seq2126 98.7 1e-15 seq2106 96.9 4e-15 seq2140 95.1 1e-14 seq1818 95.1 1e-14 seq1712 95.1 1e-14 >seq2156 Length=2198910 Score = 140 bits (154), Expect = 4e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||| | ||| | ||| ||||||||| || ||||| || |||||| || |||| || Sbjct 1777921 CACGAGATGGAGTGTCGACTCCTTTTGGATGTTGTAGTCGCTCAGAGTGCGACCGTCCTC 1777862 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 ||||| || |||||||| ||||||||||| ||||||| ||| | | |||||||||| Sbjct 1777861 CAGCTGTTTTCCAGCGAAAATGAGTCGCTGTTGGTCGGGCGGGATACCCTCCTTGTCCTG 1777802 Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 |||||| ||| | || | | |||||| || ||| || |||| |||||| ||||| Sbjct 1777801 GATTTTGGCTTTCACGTTCTCGATGGTGTCGGACGCTTCGACCTCGAGCGTGATCGTTTT 1777742 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || ||||| || ||||||||||| Sbjct 1777741 TCCAGTGAGAGTCTTCACGAAGATTTGCAT 1777712 Score = 122 bits (134), Expect = 1e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||||| | ||| | ||||| ||||| || ||||||||| |||||||| || | | Sbjct 1777315 CCTCCTCGGAGACGGAGAACCAAGTGCAAGGTCGACTCCTTTTGGATATTGTAGTCGGAC 1777256 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || |||| || ||||| ||||||||||| || || ||||||||||| | || Sbjct 1777255 AGCGTGCGACCGTCTTCGAGCTGTTTACCAGCGAAAATCAGACGCTGCTGGTCCGGTGGG 1777196 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || |||||||| ||| ||| |||| | | | |||||| | || || Sbjct 1777195 ATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTTTCGATCGTGTCAGAGGGCTCGACC 1777136 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | ||||| || ||||||||||| ||||| || || || ||||| Sbjct 1777135 TCCAGAGTGATCGTCTTGCCCGTTAGGGTCTTGACGAAAATCTGCAT 1777089 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 |||||| | | ||| | ||| | ||| | ||| |||||| || ||||||||||| Sbjct 1775847 TCCTCCGCGCAGACGAAGCACGAGATGGAGCGTGGACTCCTTCTGGATATTGTAATCGCT 1775788 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || || || |||| || || ||||| |||||||| || |||||||||||||||| || Sbjct 1775787 GAGGGTTCGTCCGTCCTCAAGTTGCTTGCCAGCGAAGATCAGTCGCTGCTGGTCGGGGGG 1775728 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | || ||||||||| ||| || || | | | | ||||||| ||| || || Sbjct 1775727 AATGCCCTCCTTGTCTTGGATCTTGGCCTTCACGTTTTCGATCGTGTCGGACGACTCGAC 1775668 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 || | |||||| || || || || |||||||| || ||||| |||||| Sbjct 1775667 CTCCAACGTGATCGTCTTTCCGGTCAGCGTCTTCACGAAGATCTGCATT 1775619 Score = 107 bits (118), Expect = 2e-18 Identities = 143/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||||||||| || ||||| || | || || || |||| || ||||| || |||||||| Sbjct 1775583 CTCCTTTTGGATGTTGTAGTCCGAAAGGGTTCGGCCGTCTTCAAGCTGTTTTCCAGCGAA 1775524 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || || ||||| || | || | | ||| |||||| |||||| || | | Sbjct 1775523 GATCAGACGTTGCTGATCCGGAGGGATTCCCTCTTTGTCCTGGATTTTAGCCTTCACATT 1775464 Query 43112 CGCCACCGTGTCGCTCGAT-TCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||| ||| || ||||||| ||||||||||||||| || || || || | Sbjct 1775463 CTCAATGGTGTCGG-CGAGCTCGACATCGAGCGTGATGGTTTTGCCGGTGAGAGTTTTGA 1775405 Query 43171 CAAAGATTTGCATTTT 43186 | |||||||||||||| Sbjct 1775404 CGAAGATTTGCATTTT 1775389 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| | | ||| | |||| ||||| ||| ||||| || || ||||| || | | Sbjct 1777087 CCTCCGCGAAGACGGAGGACCAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAC 1777028 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | || || |||| || ||||| || |||||||| ||||||||||| || || | || Sbjct 1777027 AACGTGCGACCGTCCTCAAGCTGTTTGCCAGCGAAGATGAGTCGCTGTTGATCCGGAGGA 1776968 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | | ||||||||| ||| || ||||| | | | ||||||| | ||| || Sbjct 1776967 ATTCCCTCCTTGTCTTGGATCTTGGCTTTGACGTTTTCGATCGTGTCGGAAGGTTCGACC 1776908 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | |||||| || |||||||| || ||||| || ||||| ||||| Sbjct 1776907 TCCAACGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 1776861 Score = 100 bits (110), Expect = 3e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 42980 ATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTG 43039 ||||| ||| ||| || ||||| ||||| || || || || |||| || || || Sbjct 1776380 ATGCAGAGTGGACTCTTTCTGAATGTTGTAGTCGCTGAGCGTGCGACCGTCCTCGAGTTG 1776321 Query 43040 CTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTT 43099 ||| || ||||| || | | ||||||||||| || | || ||||||||| |||||| Sbjct 1776320 CTTCCCGGCGAAGATCAACCTCTGCTGGTCGGGAGGAATGCCCTCCTTGTCTTGGATTTT 1776261 Query 43100 TTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 43159 |||| || | | |||||| | ||||| |||| |||||| ||||| || || Sbjct 1776260 CGCCTTGACGTTCTCGATCGTGTCCGAAGGCTCCACTTCGAGCGTGATTGTTTTTCCAGT 1776201 Query 43160 TAGCGTCTTTACAAAGATTTGCATT 43184 || ||||| || ||||| |||||| Sbjct 1776200 CAGTGTCTTCACGAAGATCTGCATT 1776176 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||| ||||| || |||||||| || || || | || || |||||||| |||||||| Sbjct 1778131 CTCTTTTTGGATGTTGTAATCGCTCAATGTGCGACCATCCTCGAGCTGCTTGCCAGCGAA 1778072 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||| | || | | |||||||||| ||| ||| || | | Sbjct 1778071 AATAAGACGCTGCTGGTCTGGGGGAATCCCCTCCTTGTCCTGGATCTTTGCCTTTACGTT 1778012 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | ||||| || || || || | |||||||| || || || || ||||| || Sbjct 1778011 CTCGATGGTGTCCGACGGCTCGACTTCCAGGGTGATGGTCTTCCCGGTGAGGGTCTTCAC 1777952 Query 43172 AAAGATTTGCAT 43183 |||||| ||||| Sbjct 1777951 AAAGATCTGCAT 1777940 >seq2090 Length=1018027 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 873367 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 873426 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 873427 ATACTAACGAGGA 873439 >seq2126 Length=1290513 Score = 98.7 bits (108), Expect = 1e-15 Identities = 69/79 (87%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 60059 AAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTC 60118 ||| || |||| || | ||||||||||||| ||||||||||||||||||||| ||||| Sbjct 1121450 AAAATTACTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTT 1121509 Query 60119 ACCACTATACTACCGAGGA 60137 |||||||||||| |||||| Sbjct 1121510 ACCACTATACTAACGAGGA 1121528 >seq2106 Length=1317924 Score = 96.9 bits (106), Expect = 4e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| | |||| || | ||||||||||||| ||||||||||||||||||||| |||| Sbjct 1315907 AAAAAGTAACTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 1315966 Query 60117 TCACCACTATACTACCGAGGA 60137 | |||||||||||| |||||| Sbjct 1315967 TTACCACTATACTAACGAGGA 1315987 >seq2140 Length=761746 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 375051 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 374992 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 374991 TACTAACGAGGA 374980 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 380224 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 380283 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 380284 TACTAACGAGGA 380295 >seq1818 Length=404888 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 328515 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 328456 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 328455 TACTAACGAGGA 328444 >seq1712 Length=2183804 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 1405631 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 1405690 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 1405691 TACTAACGAGGA 1405702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571801796391080