Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq2156 116 2e-21 >seq2156 Length=2198910 Score = 116 bits (128), Expect = 2e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || |||||||| | || ||||| || |||||||| ||| | Sbjct 1778166 CCACCACGCAGACGAAGAACCAGGTGGAGGGTGGACTCTTTTTGGATGTTGTAATCGCTC 1778107 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | || | || || | ||||||||| |||||||| || ||||||||||| ||| Sbjct 1778106 AATGTGCGACCATCCTCGAGCTGCTTGCCAGCGAAAATAAGACGCTGCTGGTCTGGGGGA 1778047 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| |||||| ||||| | | || | || | || ||||| Sbjct 1778046 ATCCCCTCCTTGTCCTGGATCTTTGCCTTTACGTTCTCGATGGTGTCCGACGGCTCGACT 1777987 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| || |||||||| || ||||||||||||||||| Sbjct 1777986 TCCAGGGTGATGGTCTTCCCGGTGAGGGTCTTCACAAAGATCTGCAT 1777940 Score = 114 bits (126), Expect = 8e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| |||||||| | ||||| || || | || || ||||| || ||||| ||| Sbjct 1775847 TCCTCCGCGCAGACGAAGCACGAGATGGAGCGTGGACTCCTTCTGGATATTGTAATCGCT 1775788 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || || |||| || | |||||||| ||||| || || |||||||||||| ||| Sbjct 1775787 GAGGGTTCGTCCGTCCTCAAGTTGCTTGCCAGCGAAGATCAGTCGCTGCTGGTCGGGGGG 1775728 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||||||| ||||| ||| | | | |||| |||| ||| ||||| Sbjct 1775727 AATGCCCTCCTTGTCTTGGATCTTGGCCTTCACGTTTTCGATCGTGTCGGACGACTCGAC 1775668 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||| || || ||||| || || ||||| ||||||||||| Sbjct 1775667 CTCCAACGTGATCGTCTTTCCGGTCAGCGTCTTCACGAAGATCTGCAT 1775620 Score = 111 bits (122), Expect = 1e-19 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTC--GG 34220 || || || || | ||||||||| || | || ||| ||||| ||||||||||| || Sbjct 1776859 CCTCCTCGGAGGCGCAGCACCAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCCAGG 1776800 Query 34221 ACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGG 34280 | | || || |||| || | ||| ||||| ||||| ||||||||||| |||||| | Sbjct 1776799 AGGG-TG-CGACCGTCCTCGAGCTGTTTGCCAGCGAAGATGAGCCGCTGTTGGTCGGGCG 1776742 Query 34281 GCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGA 34340 | | || |||||| || || || ||| | | | |||| |||| || ||||| Sbjct 1776741 GGATGCCCTCCTTATCCTGAATTTTCGCCTTCACGTTCTCGATCGTGTCGGACGGTTCGA 1776682 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | || | |||||| || || || ||||| ||||| || ||||||||||| Sbjct 1776681 CTTCAAGCGTGATCGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 1776633 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | || ||||| || | || ||| ||||| ||||||||||||||| Sbjct 1777087 CCTCCGCGAAGACGGAGGACCAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAC 1777028 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | | || |||| || | ||| ||||| ||||| ||||| ||||| || || || Sbjct 1777027 AACGTGCGACCGTCCTCAAGCTGTTTGCCAGCGAAGATGAGTCGCTGTTGATCCGGAGGA 1776968 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||||||| ||| || ||||| | | | |||| |||| | |||||| Sbjct 1776967 ATTCCCTCCTTGTCTTGGATC-TTGGCTTTGACGTTTTCGATCGTGTCGGAAGGTTCGAC 1776909 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||| || ||||| ||||| || || || ||||||||||| Sbjct 1776908 CTCCAACGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 1776861 Score = 105 bits (116), Expect = 4e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || || || |||||||||||| ||| || |||| |||| ||| || || |||||| Sbjct 1777902 TCCTTTTGGATGTTGTAGTCGCTCAGAGTGCGACCGTCCTCCAGCTGTTTTCCAGCGAAA 1777843 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATC 34317 ||||| ||||| |||||| || | | ||||||||| || ||| ||||| | | Sbjct 1777842 ATGAGTCGCTGTTGGTCGGGCGGGATACCCTCCTTGTCCTGGAT-TTTGGCTTTCACGTT 1777784 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | || | |||| || |||||| || | |||||| ||||| || |||||||| ||||| Sbjct 1777783 CTCGATGGTGTCGGACGCTTCGACCTCGAGCGTGATCGTTTTTCCAGTGAGAGTCTTCAC 1777724 Query 34378 AAAGATCTGCAT 34389 ||||| ||||| Sbjct 1777723 GAAGATTTGCAT 1777712 Score = 95.1 bits (104), Expect = 8e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||| ||| || || || || || || ||||||||||||||| || |||| Sbjct 1777300 AGAACCAAGTGCAAGGTCGACTCCTTTTGGATATTGTAGTCGGACAGCGTGCGACCGTCT 1777241 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||| || || |||||||| || ||||||||||| || | || |||||||| Sbjct 1777240 TCGAGCTGTTTACCAGCGAAAATCAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCT 1777181 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 |||||| ||| | || | |||| || | | ||||| |||| ||||| || Sbjct 1777180 TGGATCTTTGCCTTGACATTTTCGATCGTGTCAGAGGGCTCGACCTCCAGAGTGATCGTC 1777121 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| || || || || || || |||||||| Sbjct 1777120 TTGCCCGTTAGGGTCTTGACGAAAATCTGCAT 1777089 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/228 (69%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 |||||||| || | || || || || | ||| ||||||||| |||||||| || ||| Sbjct 1778393 CCGCCGCGAAGACGAAGAACGAGATGGAGCGTAGATTCTTTCTGGATGTTGTAATCCGAC 1778334 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | |||| |||| || | || ||||| |||||||| || || ||||||||| ||| Sbjct 1778333 AAGGTACGGCCGTCTTCGAGTTGTTTGCCAGCGAAAATAAGACGTTGCTGGTCGGGGGGA 1778274 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 || |||||||| || || ||| | || | || | || | | ||| || Sbjct 1778273 TTCCT-TCCTTGTCTTGGATTTTGGCCTTGACATTCTCGATGGTGTCAGAGGCTTCTACT 1778215 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | ||||||||||| || || | ||||| || || ||||||||| Sbjct 1778214 TCGAGAGTGATGGTTTTTCCCGTCAAGGTTTTGACGAAAATCTGCATC 1778167 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | ||||||||||| | || ||| ||||| |||||||| ||||| Sbjct 1776631 CCTCCGCGGAGGCGGAGCACCAGGTGAAGCGTCGATTCCTTCTGGATGTTGTAATCGGAG 1776572 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || || | || ||||| ||||| || || ||||| || || || Sbjct 1776571 AGGGTTCGTCCTTCTTCGAGTTGTTTGCCGGCGAAGATCAGTCGCTGTTGATCAGGCGGA 1776512 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||||| ||||| ||| | | | || | |||| | ||||| Sbjct 1776511 ATTCCTTCCTTGTCCTGAATCTTGGCCTTGACGTTTTCGATGGTGTCGGAGGGCTCGACC 1776452 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| ||||| |||||||| ||||||||||| |||||||| Sbjct 1776451 TCGAGGGTGATTGTTTTTCCGGTGAGCGTTTTCACAAAAATCTGCAT 1776405 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || || || ||||||||||| || || ||| |||| || | ||| || || ||||| Sbjct 1775582 TCCTTTTGGATGTTGTAGTCCGAAAGGGTTCGGCCGTCTTCAAGCTGTTTTCCAGCGAAG 1775523 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || || || ||||| || || | | ||| ||||| || || ||| | || Sbjct 1775522 ATCAGACGTTGCTGATCCGGAGGGATTCCCTCTTTGTCCTGGATTTTAGCCTTCACATTC 1775463 Query 34319 GCTATCGAATCGGTCGAT-TCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | || | |||| ||| ||||| || | ||||||||||||||||||||||||||| || Sbjct 1775462 TCAATGGTGTCGG-CGAGCTCGACATCGAGCGTGATGGTTTTGCCGGTGAGAGTTTTGAC 1775404 Query 34378 AAAGATCTGCAT 34389 ||||| ||||| Sbjct 1775403 GAAGATTTGCAT 1775392 Score = 84.2 bits (92), Expect = 1e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 |||||||| |||||||||||| ||| || |||| || | ||||| || ||||| Sbjct 1776367 TCTTTCTGAATGTTGTAGTCGCTGAGCGTGCGACCGTCCTCGAGTTGCTTCCCGGCGAAG 1776308 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || | || |||||||||| || | || ||||||||| || || ||| | | Sbjct 1776307 ATCAACCTCTGCTGGTCGGGAGGAATGCCCTCCTTGTCTTGGATTTTCGCCTTGACGTTC 1776248 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | |||| || | | || || || | |||||| ||||| || || || || ||||| Sbjct 1776247 TCGATCGTGTCCGAAGGCTCCACTTCGAGCGTGATTGTTTTTCCAGTCAGTGTCTTCACG 1776188 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 1776187 AAGATCTGCAT 1776177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323063294320160