Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq614 194 4e-44 >seq614 Length=536467 Score = 194 bits (214), Expect = 4e-44 Identities = 639/985 (65%), Gaps = 29/985 (3%) Strand=Plus/Minus Query 248757 CGTCATTCAGGACAACGCGCACCTCCTGGACGGCGCGATTGACTACGGCAAAGATTTGGA 248816 |||||| || |||| | ||| ||||||| || || | ||||| | || || | Sbjct 531734 CGTCAT---GGCCAACAAGGACCGCCTGGACTCGGCAATAGTCTACGATAGGGACTTCAA 531678 Query 248817 GTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAA 248876 ||| | | ||| | ||| ||| || ||| ||| || ||||| ||||| || || || Sbjct 531677 CTACAACTACTTCGGATTCCGAACCCTCGAGCGATCCTACCTCCTAAAAATCGACGGTAA 531618 Query 248877 GATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGA 248936 ||||| || || |||||||||| ||||||| || | ||||| |||||| || || Sbjct 531617 AATCGTCGAGAGACCTCAGCACATGCTGATGCGCGTTTCGGTCGGAATTCACGGTGACGA 531558 Query 248937 CATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCAC 248996 | | ||| || ||||||| |||| | ||||| || ||| | || || |||| Sbjct 531557 CGTGGAGGCCGCCATCGAGACCTACAACTTCATGAGCGAGAAATGGTTCACCCACGCCAG 531498 Query 248997 ACCGACGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGC 249056 |||||||| |||||||| ||||| | | ||| ||||||| || || || || | Sbjct 531497 TCCGACGCTGTTCAACGCGGGTACTTGCCGCCCACAGTTGAGCTCCTGTTTCCTGCTGAC 531438 Query 249057 CATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGACGGCGAAGATTTC 249116 ||| | || || ||| |||| || || || || ||||| | || || ||| || Sbjct 531437 AATGAAGGATGATTCTATCGAAGGGATCTACGAAACGCTGAGCCAATGCGCTCTGATCTC 531378 Query 249117 TAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACAT 249176 |||| ||| || || || ||| | | || ||| ||| | | ||| || ||||| Sbjct 531377 GAAATCCGCCGGTGGTATTGGTGTAAACATCCATTGCATTCGACCTACGGGCTCTTACAT 531318 Query 249177 CAAAGGTACAAATGGG--GTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCC 249234 | || || || ||| ||| | |||||||| ||| | || ||| || | | Sbjct 531317 CGCCGGGACGAACGGGACGTCGA--ACGGTATCGTTCCCATGCTGCGAGTTTTCAACAAC 531260 Query 249235 ACCGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGTCGTTCGCCATGTATTTG 249291 ||||| | | | || |||||| ||| | ||| || | |||||||| ||| | Sbjct 531259 ACCGCTCGCTACGTCGACCAGGGCGGCAACAAACGACCCGGCGCTTTCGCCATCTATCTC 531200 Query 249292 GAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAG 249351 || |||||||| |||||| || |||||| |||| | || |||| |||| ||| Sbjct 531199 GAGCCGTGGCACGGCGATATTTTCGAGTTCTTGGATCTCCGTAAAAACACTGGCATCGAA 531140 Query 249352 CTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCGC 249411 ||| | || || ||||||||||||| ||||||| | | ||| |||||||| ||| Sbjct 531139 GAGATGCGTGCCCGCGACCTCTTCTACGCCCTGTGGATTCCGGACCTGTTCATGAAACGC 531080 Query 249412 GTCAAGGCCGACGGCGATTGGACGCTTCTTTCTCCGTCCGACG-CCCCGGACCTCATCGA 249470 || | ||||| | ||| |||| | | ||| ||| ||||| ||||| | Sbjct 531079 GTTGAACAAAACGGCAAGTGGTCGCTCATGTGTCC-CAATACGTGCCCGGGCCTCAGTG- 531022 Query 249471 TCTACAC----GGCGCCGACTTCGACCAAGCCTATAAGAAATACGA-ATCCAACG----- 249520 |||| |||| ||| ||||| || ||| || || || | || | Sbjct 531021 ---ACACGTGGGGCGACGAGTTCGAGAAACTCTACGAGGGCTATGAGAAGGAAGGCCGTT 530965 Query 249521 GCATCGGCAAGACAATCAAGGCTCGGACCCTTTTTGCGAAGGTGGTGGAGTCCCAGATAG 249580 |||| || || ||| | || | || || | | | | |||| ||||| | Sbjct 530964 ACATCCGCCAG---ATCGACGCCCAGAAACTGTGGTATACGATCCTGGAAAGTCAGATCG 530908 Query 249581 AGACAGGGGGGCCGTATTATTTGTTCAAAGACGCGTGCAACGCCAAGAGTAACCAACGGC 249640 | || ||| ||||| ||| ||| ||||| |||||| |||||| ||||||| | Sbjct 530907 AAACCGGGACCCCGTACATGCTGTACAAGGACGCTTGCAACCGCAAGAGCAACCAACAGA 530848 Query 249641 ATCTTGGTACCATCCGCTCGTCAAATCTCTGTGCAGAGGTGATTCAATACTCGTCCAAGG 249700 |||| || |||||| | || ||||| || |||| | | | |||||||| | Sbjct 530847 ATCTCGGGACCATCAAGTGCTCGAATCTTTGCACAGAAATCGTCGAGTACTCGTCGCCAG 530788 Query 249701 AGGAGATTGCCGTCTGCAACCTGGC 249725 | ||||| || ||||||||| |||| Sbjct 530787 ACGAGATCGCGGTCTGCAACTTGGC 530763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073735981875648