Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq2156 132 4e-26 >seq2156 Length=2198910 Score = 132 bits (146), Expect = 4e-26 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193 ||||| ||| ||| |||||||||||||||||| | || |||| |||| || ||||| Sbjct 1776379 TGCAGAGTGGACTCTTTCTGAATGTTGTAGTCGCTGAGCGTGCGACCGTCCTCGAGTTGC 1776320 Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 || |||||||| ||||||| ||| ||||||||||| | ||||||||||| ||||| Sbjct 1776319 TTCCCGGCGAAGATCAACCTCTGCTGGTCGGGAGGAATGCCCTCCTTGTCTTGGATTTTC 1776260 Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313 ||| || | | | ||||| | |||||| || | || || || || || ||| Sbjct 1776259 GCCTTGACGTTCTCGATCGTGTCCGAAGGCTCCACTTCGAGCGTGATTGTTTTTCCAGTC 1776200 Query 45314 AGAGTCTTCACAAAGATTTGCAT 45336 || |||||||| ||||| ||||| Sbjct 1776199 AGTGTCTTCACGAAGATCTGCAT 1776177 Score = 132 bits (146), Expect = 4e-26 Identities = 145/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 |||||| || |||||||||||| |||| |||| |||| ||||| |||||||| ||||| Sbjct 1777903 CTCCTTTTGGATGTTGTAGTCGCTCAGAGTGCGACCGTCCTCCAGCTGTTTTCCAGCGAA 1777844 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || | |||||||||||||| || | ||||||||||||| ||||| || || Sbjct 1777843 AATGAGTCGCTGTTGGTCGGGCGGGATACCCTCCTTGTCCTGGATTTTGGCTTTCACGTT 1777784 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | | |||| | || ||||| | || ||||| || || || ||||||||||| Sbjct 1777783 CTCGATGGTGTCGGACGCTTCGACCTCGAGCGTGATCGTTTTTCCAGTGAGAGTCTTCAC 1777724 Query 45325 AAAGATTTGCATG 45337 |||||||||||| Sbjct 1777723 GAAGATTTGCATG 1777711 Score = 113 bits (124), Expect = 4e-20 Identities = 153/211 (73%), Gaps = 3/211 (1%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||||| || ||| ||||| |||||||||||| | || |||| |||| || Sbjct 1776057 ACCAGATGCAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTGAGCGTGCGACCGTCTTCG 1775998 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||| ||||| ||||| ||||| ||||||||||||||||| | ||||| |||||| Sbjct 1775997 AGTTGCTTTCCAGCGAAGATCAAACGCTGTTGGTCGGGAGGAATGCCCTCTTTGTCCTGG 1775938 Query 45248 ATTTTTTG--CTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCT 45305 | |||| | ||| || | | |||| ||||||| || | ||| || || | Sbjct 1775937 AGTTTTGGACCTTGACGTTTTCAATCGTGTCGGAGGCCTCCACGTCGAGGGTGATGGT-T 1775879 Query 45306 TGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||||| || ||||| || || || ||||| Sbjct 1775878 TGCCCGTGAGGGTCTTGACGAAAATCTGCAT 1775848 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || ||| ||| || || |||||||| ||| ||| | |||| | || || Sbjct 1778148 ACCAGGTGGAGGGTGGACTCTTTTTGGATGTTGTAATCGCTCAATGTGCGACCATCCTCG 1778089 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| || | ||||| ||||| || || | |||||||||||| Sbjct 1778088 AGCTGCTTGCCAGCGAAAATAAGACGCTGCTGGTCTGGGGGAATCCCCTCCTTGTCCTGG 1778029 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || ||| ||| || | | | | ||||| ||| || |||| ||| || ||||| Sbjct 1778028 ATCTTTGCCTTTACGTTCTCGATGGTGTCCGACGGCTCGACTTCCAGGGTGATGGTCTTC 1777969 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || || || |||||||||||||| |||||| Sbjct 1777968 CCGGTGAGGGTCTTCACAAAGATCTGCATG 1777939 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||||| ||| |||||||| |||||||||||| || |||| |||| || Sbjct 1777069 ACCAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAACGTGCGACCGTCCTCA 1777010 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || ||||| || ||||| || | |||||||| || ||||| | ||||||||||| Sbjct 1777009 AGCTGTTTGCCAGCGAAGATGAGTCGCTGTTGATCCGGAGGAATTCCCTCCTTGTCTTGG 1776950 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || || || | | |||| | || ||||||| || ||||||||| Sbjct 1776949 ATCTTGGCTTTGACGTTTTCGATCGTGTCGGAAGGTTCGACCTCCAACGTGATCGTCTTG 1776890 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| || ||||| || ||||| ||||| Sbjct 1776889 CCCGTGAGGGTCTTGACGAAGATCTGCAT 1776861 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| || || ||| |||||||| ||||||||||| || |||| |||| || Sbjct 1776841 ACCAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCCAGGAGGGTGCGACCGTCCTCG 1776782 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || ||||| || ||||| || | ||||||||||||||| || | |||||||| ||| | Sbjct 1776781 AGCTGTTTGCCAGCGAAGATGAGCCGCTGTTGGTCGGGCGGGATGCCCTCCTTATCCTGA 1776722 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||| || | | | |||| || || || | || |||||||| Sbjct 1776721 ATTTTCGCCTTCACGTTCTCGATCGTGTCGGACGGTTCGACTTCAAGCGTGATCGTCTTA 1776662 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||||| || || || || ||||| |||||| Sbjct 1776661 CCCGTGAGGGTTTTGACGAAGATCTGCATG 1776632 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| ||||| |||||| || ||||||||||| || || |||| || || || Sbjct 1775595 GTGGAGCGTCGACTCCTTTTGGATGTTGTAGTCCGAAAGGGTTCGGCCGTCTTCAAGCTG 1775536 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 |||||| ||||| |||| || || || || ||||| | ||||| |||||| ||||| Sbjct 1775535 TTTTCCAGCGAAGATCAGACGTTGCTGATCCGGAGGGATTCCCTCTTTGTCCTGGATTTT 1775476 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | | |||| | ||| || || | || || || ||||| || Sbjct 1775475 AGCCTTCACATTCTCAATGGTGTCGGCGAGCTCGACATCGAGCGTGATGGTTTTGCCGGT 1775416 Query 45313 CAGAGTCTTCACAAAGATTTGCATGTT 45339 ||||| || || ||||||||||| || Sbjct 1775415 GAGAGTTTTGACGAAGATTTGCATTTT 1775389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395064554081431