Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq614 309 4e-79 seq946 158 2e-33 >seq614 Length=536467 Score = 309 bits (342), Expect = 4e-79 Identities = 1198/1865 (64%), Gaps = 36/1865 (2%) Strand=Plus/Plus Query 62037 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 62096 ||||| | ||||| ||||| | || ||||| ||||| | | |||||||| || Sbjct 529848 TTGTCGACAGTGAACTGAATCGCCTGGGCGGCGGGCTTCGTTCTCAAGTAGTACATCCCG 529907 Query 62097 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 62156 ||||| | |||||| |||| ||||| |||||||| ||| || || | | | Sbjct 529908 GTTTTCAAACCGAGTTTCCAGCCGTAGAAATGCATCGACGTGAGCTTCCCGAAGTTGGTC 529967 Query 62157 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62216 || || | ||||| |||| |||||| || ||||||||||| || || | ||| || ||| Sbjct 529968 TCGGCGAAGTGGATGTTCAGAGATTGGCTCTGATCGATGAACGCCCCACGGTCAGCCGCC 530027 Query 62217 ATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCT 62276 ||||| ||||| |||| || | | |||||||| || || | | | || | | Sbjct 530028 ATTTTGATGATGTTCTTCTGAGGCAGTTCCCAAACGGTCCGGTAGAGTTGTTTCAATTTA 530087 Query 62277 TCTGGAAGGTTTGTATTCTGAATGGATCCACCAT--CTACC-ATAATCCTATTCTTGATC 62333 || || | | |||||| | ||| ||| | ||| | | || | ||||| ||| Sbjct 530088 TCAGGGATATCAAGATTCTGCACGGA---ACCGTTGCTAGCGACAAGCTCGTTCTTCATC 530144 Query 62334 TCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGG 62393 || ||||| | ||||| | | | | ||||| || | || || | |||| Sbjct 530145 GTTTCGTTCCAGAGGCCCAAGTCGGTGAGATCCTTCAGGAGGTGGTGATTGACGATTTGG 530204 Query 62394 AATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCA 62453 ||||| || || | |||| | | || | || || || ||||| || | ||||| Sbjct 530205 AATTCACCGGAGAGAACTCGTCTGGCATACACGTTGCTCGTGTACGGCTCAATGGACTCG 530264 Query 62454 TTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTT 62513 || || || | || ||||| |||||||| || ||||| || |||| || | |||||| Sbjct 530265 TTGTTGCCGAGGATCTGAGCCGTTGATGCTGTGGGCATGGGCGCCAGCAGCAGACTATTC 530324 Query 62514 CTAAGACCGTA-TGTTCTGATTTTATCTTTTA-GATGTTCCCAATTCCAAAGATCCGACG 62571 | | |||| || | |||||| ||| | || ||||| | ||| || || || | Sbjct 530325 CGGATTCCGTGCTGGGC-GATTTT-TCTCCGAAGACCGTCCCAGTCCCAGAGGTCGGATG 530382 Query 62572 GTACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTACGATCCTACATATG 62631 | ||| || || ||||| || || | || | || | |||| Sbjct 530383 GCTTGACATTCCACATGTCATGCTGCAGAATCCCCTTTGAGACGGGGCAGCCGGCGTATG 530442 Query 62632 TATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAA 62691 | || || | ||| | | || || || | || || || || || ||| || |||| | Sbjct 530443 TCTCGTAGGTTCCGTGGATTTCCGCGAGCTCGCAGCTTGCTTCCAACGCAGCGAAATAGA 530502 Query 62692 TGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTA 62751 ||||||| ||||| || | || ||||| ||||||||||| || || ||||| | Sbjct 530503 TGGTTTCGAAGATTTTGCTGTTCAGATCCATCGCTTCCGGGCTGTCGAAAGGATACCGCA 530562 Query 62752 AGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTAT 62811 || || ||||| || || | || || ||||| || ||||| |||| ||||||||| | Sbjct 530563 TCAGGATGAACGCATCGGCCAGACCCTGGACACCGATTCCGATCGGTCGATGTCTCTTGT 530622 Query 62812 TAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTC 62871 | ||| ||||| || | ||||| || || || || || ||||| ||||| |||| Sbjct 530623 TGCTTCGTTCGGCTTCCGGCACGGGATAGTAGTTGATGTCGATGATTTTGTTGAGGTTTC 530682 Query 62872 TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATC-AAATCGCCCATCTATTACA 62930 || ||||| ||| || ||| | | || || ||| |||| || || Sbjct 530683 GCGTGATGGCTTTGGTCACTTCTCTCAATCTCTCGAAGTCGAAAGCGCCG-TCGTGCACG 530741 Query 62931 AACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATAT 62990 || ||| | || || || |||| || || || || | ||| | | || || Sbjct 530742 AAGCGGTTGAGGGCCACCGAAGCCAAGTTGCAGACCGCGATCTCGTCTGGCGACGAGTAC 530801 Query 62991 TGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTC 63050 | | || || ||||||||||| |||||||| || || | ||| ||||| || ||| Sbjct 530802 TCGACGATTTCTGTGCAAAGATTCGAGCACTTGATGGTCCCGAGATTCTGTTGGTTGCTC 530861 Query 63051 TTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCT 63110 || ||| || || ||||| || || ||| | || || || ||||| |||||| ||| Sbjct 530862 TTGCGGTTGCAAGCGTCCTTGTACAGCATGTACGGGGTCCCGGTTTCGATCTGACTTTCC 530921 Query 63111 ATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATT-TGTATCTCCTTTCTCTTTC 63169 | |||| | ||| | | || | | | | | | |||| | | ||| | || Sbjct 530922 AGGATCGTATACCACA-GTTTCTGGGCGTCGATCTGGCGGATGTAACGGCCTTCCTTCTC 530980 Query 63170 GTATAGA----GTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCC---AATCTAG 63222 |||| ||| | || ||||||||||| ||||| |||| | | | Sbjct 530981 --ATAGCCCTCGTAGAGTTTC--TCGAACTCGTCGCCCCACG---TGTCACTGAGGCCCG 531033 Query 63223 GACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGA 63282 | || || |||||||| | |||||||| |||| | | || |||||||| || | Sbjct 531034 GGCACGTATTGGGACACATGAGCGACCACTTGCCGTTTTGTTCAACGCGTTTCATGAACA 531093 Query 63283 GATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTAT 63342 | || |||||||| || || || || || | | | || ||| | || || | Sbjct 531094 GGTCCGGAATCCACAGGGCGTAGAAGAGGTCGCGGGCACGCATCTCTTCGATGCCAGTGT 531153 Query 63343 TCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCA 63402 | || ||||| | |||| | | |||||| |||||||| || | || ||||| | Sbjct 531154 TTTTACGGAGATCCAAGAACTCGAAAATATCGCCGTGCCACGGCTCGAGATAGATGGCGA 531213 Query 63403 TAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTC 63462 | | || || |||||||| || ||||| || | ||| | ||||||||| || |||||| Sbjct 531214 AAGCGCCGGGTCGTTTGTTGCCGCCCTGGTCGACGTAGCGAGCGGTGTTGTTGAAAACTC 531273 Query 63463 TCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGG 63522 || ||| |||| |||||||| || | || || || |||| ||| || || | | Sbjct 531274 GCAGCATGGGAACGATACCGTTCGACGTCCCGTTCGTCCCGGCGATGTAAGAGCCCGTAG 531333 Query 63523 CACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATC 63582 ||||| | || || ||| || || || || ||| ||||| | |||||| Sbjct 531334 GTCGAATGCAATGGATGTTTACACCAATACCACCGGCGGATTTCGAGATCAGAGCGCATT 531393 Query 63583 GTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAG- 63641 | | | ||| || ||||| ||||| || |||||| |||| | || || |||||| Sbjct 531394 GGCTCAGCGTTTCGTAGATCCCTTCGATAGAATCATCCTTCATTGTCAGCAGGAAACAGG 531453 Query 63642 --CTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 63699 || || | || | | |||| ||||| || || | || ||| ||||| || | Sbjct 531454 AGCTCAACTGTGGGCGGCAAGTA---CCCGCGTTGAACAGCGTCGGACTGGCGTGGGTGA 531510 Query 63700 ACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGA 63758 ||||||| || | | ||||| ||||| || || | || | || || | ||| Sbjct 531511 ACCATTTCTCGCTCATGAAGTTGTAGGTCTCGATGGCGGCCTCCACGTCGTCACCG-TGA 531569 Query 63759 ATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATT 63818 ||||| || | || ||||| | ||||||||||||||| || || ||||| || ||| Sbjct 531570 ATTCCGACCGAAACGCGCATCAGCATGTGCTGAGGTCTCTCGACGATTTTACCGTCGATT 531629 Query 63819 TTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGT 63878 || | | ||||||| || | ||| || || || |||||||| ||||| | Sbjct 531630 TTTAGGAGGTAGGATCGCTCGAGGGTTCGGAATCCGAAGTAGTTGTAGTTGAAGTCCCTA 531689 Query 63879 TCGTA 63883 ||||| Sbjct 531690 TCGTA 531694 >seq946 Length=1044653 Score = 158 bits (174), Expect = 2e-33 Identities = 448/682 (66%), Gaps = 21/682 (3%) Strand=Plus/Minus Query 33278 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33337 ||| ||||| ||| ||||| || || || ||||| ||||| || || || || || || Sbjct 24374 CATTACTCCGGCTTTCTGGTACTCGCCGACGCGTTTCTCGAAGAAGTTCGTCTTCCCCTC 24315 Query 33338 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCC 33397 ||| || || | |||||||||||||| ||||| | || | | || | | | Sbjct 24314 CAACGAGATTTGCTCCATGAAATCAAATGGATTCTGACTGTTCCACAACTTGTCGCACTC 24255 Query 33398 CAATTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATT 33457 | ||| | || || ||| ||||| |||||||| ||| |||||| | |||||||| Sbjct 24254 GAGCTCAACCAACAGTCGATCGGCGACAAATTCTATGTATTGTTTCATGAGATCACAATT 24195 Query 33458 CATTCCTATGAGTTTAACT---GGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATAC 33514 ||| || ||| | | || | ||| | || || || || || || || | || Sbjct 24194 CATACC---GAGCATCGCGCACGGTAAAGCTTCGGTGAGGAACTCCTGCTCGATCGCAAC 24138 Query 33515 CGCATT-----TGTTATAATAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGT 33569 || || || | | ||| ||| || | || | |||| || | ||| ||| Sbjct 24137 GGCGTTGCGGATGATCTCATAGATC---CGCT--CTACGGACGGTTTCTGGACTAAGTGT 24083 Query 33570 TTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTA 33629 | ||||| | || ||||||||| || || ||||||||||| ||||| |||||| Sbjct 24082 CTGAACATAAGGCAAGCGAAATCGGTATGGAGGCCCTCGTCTCTCGAAATTAGCTCGTTA 24023 Query 33630 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT 33689 || || | ||||||||| || || || || || ||||| ||||| |||||||| | | Sbjct 24022 CTGAAAGTCAATCCGGGCATCAGACCGCGTTTCTTGAGCCAGAATATCGAAGCGAACGCT 23963 Query 33690 CCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG 33749 || ||||| || ||||| || || || || || | | | ||||| || || Sbjct 23962 CCACTGAAGAAAATCCCTTCGACCGCCGCGAACGCCACGACACGTTCTCCGTAGGTAGCA 23903 Query 33750 CTGTCAT---GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTT 33806 | | || ||||| || | |||||||| || ||||| || | || ||||| || Sbjct 23902 TTCTGATTCCCGATCCAATTCAGGGCCCAATCAGCTTTCTTCTTGATGCATGGCATGGTC 23843 Query 33807 TCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAA 33866 || ||||| | || |||| | ||| | ||| | | || |||| || || Sbjct 23842 TCGATGGCCCTGAATAGATGATCACGTTCCATCGGATCCGTGATGTAGGTATTGAGCAGC 23783 Query 33867 AGACTA-TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCT 33925 | || | |||||||||||||||||||| || || | || || |||||||| || | Sbjct 23782 A-ACGAGTACATTTCCGAATGAATGTTCTCCATCATGACTTGGAAGCCGTAGAAGCAGCG 23724 Query 33926 AGCCTCGGTAATCTGCACTTCT 33947 ||| || || | ||| || ||| Sbjct 23723 AGCTTCCGTGACCTGAACCTCT 23702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629800193416080