Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq946 102 8e-17 >seq946 Length=1044653 Score = 102 bits (112), Expect = 8e-17 Identities = 247/372 (66%), Gaps = 3/372 (1%) Strand=Plus/Minus Query 11611 TAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAG 11670 ||| ||| | ||||| | || || ||||| ||| | || |||||||| ||||| Sbjct 24089 TAAGTGTCTGAACATAAGGCAAGCGAAATCGGTATGGAGGCCCTCGTCTCTCGAAATTAG 24030 Query 11671 TTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGC 11730 || ||| || || ||||||||||||| || ||||| || | ||| ||||| | ||| Sbjct 24029 CTCGTTACTGAAAGTCAATCCGGGCATCAGACCGCGTTTCTTGAGCCAGAATATCGAAGC 23970 Query 11731 AAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA 11790 || | ||| ||||| || || || || || || || || || || | |||||| || Sbjct 23969 GAACGCTCCACTGAAGAAAATCCCTTCGACCGCCGCGAACGCCACGACACGTTCTCCGTA 23910 Query 11791 --TA-CCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTC 11847 || | || | | ||||| || |||||||||||||||||| || | |||| Sbjct 23909 GGTAGCATTCTGATTCCCGATCCAATTCAGGGCCCAATCAGCTTTCTTCTTGATGCATGG 23850 Query 11848 CATTGTTTCTATAGCGTTAAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATC 11907 ||| || || || || | |||| ||| ||| || ||| | | || |||| Sbjct 23849 CATGGTCTCGATGGCCCTGAATAGATGATCACGTTCCATCGGATCCGTGATGTAGGTATT 23790 Query 11908 TATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAA 11967 | | || |||||||| |||||||| || ||||| | ||| || || ||||| Sbjct 23789 GAGCAGCAACGAGTACATTTCCGAATGAATGTTCTCCATCATGACTTGGAAGCCGTAGAA 23730 Query 11968 ACATCGTGCCTC 11979 || || || || Sbjct 23729 GCAGCGAGCTTC 23718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468511851145840