Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq614 331 1e-85 seq946 156 6e-33 >seq614 Length=536467 Score = 331 bits (366), Expect = 1e-85 Identities = 1208/1876 (64%), Gaps = 30/1876 (2%) Strand=Plus/Plus Query 64830 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 64889 ||||| | ||||| ||||| | || ||||| ||||| | | |||||||| || Sbjct 529848 TTGTCGACAGTGAACTGAATCGCCTGGGCGGCGGGCTTCGTTCTCAAGTAGTACATCCCG 529907 Query 64890 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 64949 ||||| | |||||| |||| ||||| |||||||| ||| || || | | | Sbjct 529908 GTTTTCAAACCGAGTTTCCAGCCGTAGAAATGCATCGACGTGAGCTTCCCGAAGTTGGTC 529967 Query 64950 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 65009 || || | ||||| |||| |||||| || ||||||||||| || || | ||| || ||| Sbjct 529968 TCGGCGAAGTGGATGTTCAGAGATTGGCTCTGATCGATGAACGCCCCACGGTCAGCCGCC 530027 Query 65010 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCT 65069 ||||| ||||| |||| || || | |||||||| || || | | | || | | Sbjct 530028 ATTTTGATGATGTTCTTCTGAGGCAGTTCCCAAACGGTCCGGTAGAGTTGTTTCAATTTA 530087 Query 65070 TCTGGAAGGTTTGTATTCTGAATGGATCCACCAT--CT-GCCATAATCCTATTCTTGATC 65126 || || | | |||||| | ||| ||| | || || | || | ||||| ||| Sbjct 530088 TCAGGGATATCAAGATTCTGCACGGA---ACCGTTGCTAGCGACAAGCTCGTTCTTCATC 530144 Query 65127 TCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGA 65186 || ||||| | ||||| | | | | ||||| || |||| || | ||| Sbjct 530145 GTTTCGTTCCAGAGGCCCAAGTCGGTGAGATCCTTCAGGAGGTGGTGATTGACGATTTGG 530204 Query 65187 AATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCA 65246 ||||| || || | |||| | | || | || || || ||||| || | ||||| Sbjct 530205 AATTCACCGGAGAGAACTCGTCTGGCATACACGTTGCTCGTGTACGGCTCAATGGACTCG 530264 Query 65247 TTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTT 65306 || || || | || ||||| |||||||| || ||||| || |||| || | |||||| Sbjct 530265 TTGTTGCCGAGGATCTGAGCCGTTGATGCTGTGGGCATGGGCGCCAGCAGCAGACTATTC 530324 Query 65307 CTAAGACCGTA-TGTTCTGATTTTATCTTTTA-GAGGTTCCCAATTCCAAAGATCCGACG 65364 | | |||| || | |||||| ||| | || ||||| | ||| || || || | Sbjct 530325 CGGATTCCGTGCTGGGC-GATTTT-TCTCCGAAGACCGTCCCAGTCCCAGAGGTCGGATG 530382 Query 65365 GTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATG 65424 | || || ||||| || || | || | || | |||| Sbjct 530383 GCTTGACATTCCACATGTCATGCTGCAGAATCCCCTTTGAGACGGGGCAGCCGGCGTATG 530442 Query 65425 TATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAA 65484 | ||||| | ||| | | || || || || || || || || || ||| || |||| | Sbjct 530443 TCTCGTAGGTTCCGTGGATTTCCGCGAGCTCGCAGCTTGCTTCCAACGCAGCGAAATAGA 530502 Query 65485 TGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTA 65544 ||||||||||||| || | || ||||| |||||| |||| || || ||||| | Sbjct 530503 TGGTTTCGAAGATTTTGCTGTTCAGATCCATCGCTTCCGGGCTGTCGAAAGGATACCGCA 530562 Query 65545 AGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTAT 65604 || || ||||| || || | || || ||||| || ||||| |||| ||||||||| | Sbjct 530563 TCAGGATGAACGCATCGGCCAGACCCTGGACACCGATTCCGATCGGTCGATGTCTCTTGT 530622 Query 65605 TAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTC 65664 | ||| ||||| || | ||||| || || || || || ||||| ||||| |||| Sbjct 530623 TGCTTCGTTCGGCTTCCGGCACGGGATAGTAGTTGATGTCGATGATTTTGTTGAGGTTTC 530682 Query 65665 TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATC-AAATCGCTCATCTATTACA 65723 || ||||| ||| || ||| | | || || ||| ||| | || || Sbjct 530683 GCGTGATGGCTTTGGTCACTTCTCTCAATCTCTCGAAGTCGAAAGCGC-CGTCGTGCACG 530741 Query 65724 AACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATAT 65783 || ||| | || || || |||| || || || || | ||| | | || || Sbjct 530742 AAGCGGTTGAGGGCCACCGAAGCCAAGTTGCAGACCGCGATCTCGTCTGGCGACGAGTAC 530801 Query 65784 TGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTC 65843 | | || || ||||||||||| ||||||||||| || | ||| ||||| || ||| Sbjct 530802 TCGACGATTTCTGTGCAAAGATTCGAGCACTTGATGGTCCCGAGATTCTGTTGGTTGCTC 530861 Query 65844 TTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCT 65903 || ||| || || ||||| || || ||| | || || || ||||| |||||| ||| Sbjct 530862 TTGCGGTTGCAAGCGTCCTTGTACAGCATGTACGGGGTCCCGGTTTCGATCTGACTTTCC 530921 Query 65904 ATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATT-TGTATCTCTTTTCTCTTTC 65962 | |||| | ||| | | || | | | | | | |||| | ||| | || Sbjct 530922 AGGATCGTATACCACA-GTTTCTGGGCGTCGATCTGGCGGATGTAACGGCCTTCCTTCTC 530980 Query 65963 GTATAGT----GTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCC---AATCCAG 66015 |||| ||| | || ||||||||||| ||||| |||| | || | Sbjct 530981 --ATAGCCCTCGTAGAGTTTC--TCGAACTCGTCGCCCCACG---TGTCACTGAGGCCCG 531033 Query 66016 GACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGA 66075 | || || |||||||| | |||||||| |||| | | || |||||||| || | Sbjct 531034 GGCACGTATTGGGACACATGAGCGACCACTTGCCGTTTTGTTCAACGCGTTTCATGAACA 531093 Query 66076 GATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTAT 66135 | || |||||||| || || || | || | || | || ||| | || || | Sbjct 531094 GGTCCGGAATCCACAGGGCGTAGAAGAGGTCGCGGGCACGCATCTCTTCGATGCCAGTGT 531153 Query 66136 TCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCA 66195 | || ||||| | |||| | | |||||| |||||||| || | || ||||| | Sbjct 531154 TTTTACGGAGATCCAAGAACTCGAAAATATCGCCGTGCCACGGCTCGAGATAGATGGCGA 531213 Query 66196 TAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTC 66255 | | || || |||||||| || ||||| || | ||| | ||||||||| || |||||| Sbjct 531214 AAGCGCCGGGTCGTTTGTTGCCGCCCTGGTCGACGTAGCGAGCGGTGTTGTTGAAAACTC 531273 Query 66256 TCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTG 66315 || ||| |||| ||||| || || || || || ||||||| ||| || || | | Sbjct 531274 GCAGCATGGGAACGATACCGTTCGACGTCCCGTTCGTCCCGGCGATGTAAGAGCCCGTAG 531333 Query 66316 CACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATC 66375 ||||| | || || ||| || || || || ||| ||||| | |||||| Sbjct 531334 GTCGAATGCAATGGATGTTTACACCAATACCACCGGCGGATTTCGAGATCAGAGCGCATT 531393 Query 66376 GTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGC 66435 | | | ||| || ||||| || || ||| ||||||| |||| | || || |||||| Sbjct 531394 GGCTCAGCGTTTCGTAGATCCCTTCGATAGAATCATCCTTCATTGTCAGCAGGAAACAGG 531453 Query 66436 TAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACC 66495 || || | || | ||| ||||| || || | || ||| ||||| || |||| Sbjct 531454 AGCTCAACTGTGGGCGGCAAGTACCCGCGTTGAACAGCGTCGGACTGGCGTGGGTGAACC 531513 Query 66496 ATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATT 66554 |||| || | | ||||| ||||| || || | || | || || | |||||| Sbjct 531514 ATTTCTCGCTCATGAAGTTGTAGGTCTCGATGGCGGCCTCCACGTCGTCACCG-TGAATT 531572 Query 66555 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTC 66614 || || | || ||||| | ||||||||||||||| || ||||| || || ||||| Sbjct 531573 CCGACCGAAACGCGCATCAGCATGTGCTGAGGTCTCTCGACGATTTTACCGTCGATTTTT 531632 Query 66615 AACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 66674 | | ||||||| || | ||| || || || |||||||| ||||| | ||| Sbjct 531633 AGGAGGTAGGATCGCTCGAGGGTTCGGAATCCGAAGTAGTTGTAGTTGAAGTCCCTATCG 531692 Query 66675 TAAATAATAACCGAGT 66690 || | || |||||| Sbjct 531693 TAGACTATTGCCGAGT 531708 >seq946 Length=1044653 Score = 156 bits (172), Expect = 6e-33 Identities = 445/679 (66%), Gaps = 15/679 (2%) Strand=Plus/Minus Query 35854 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 35913 ||| ||||| ||| ||||| || || || ||||| ||||| || || || || || || Sbjct 24374 CATTACTCCGGCTTTCTGGTACTCGCCGACGCGTTTCTCGAAGAAGTTCGTCTTCCCCTC 24315 Query 35914 TAATGATATATTTTCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCC 35973 || || || | ||||||||||| |||||||| | || | | || | | | Sbjct 24314 CAACGAGATTTGCTCCATGAAATCAAATGGATTCTGACTGTTCCACAACTTGTCGCACTC 24255 Query 35974 CAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATT 36033 | ||| | || || ||| |||||||||||||| ||| |||||| | |||||||| Sbjct 24254 GAGCTCAACCAACAGTCGATCGGCGACAAATTCTATGTATTGTTTCATGAGATCACAATT 24195 Query 36034 CATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGC 36093 ||| || | | || | ||| | || || || || || || || | || || Sbjct 24194 CATACCGAGCATCGCGCACGGTAAAGCTTCGGTGAGGAACTCCTGCTCGATCGCAACGGC 24135 Query 36094 GTC-----TGTTATAATAGATATTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTA 36148 || || | | |||||| | | | || | |||| | | ||| ||| | Sbjct 24134 GTTGCGGATGATCTCATAGAT----CCGCT-CTACGGACGGTTTCTGGACTAAGTGTCTG 24080 Query 36149 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 36208 ||||| | || ||||||||| || || ||||||||||| ||||| ||||| Sbjct 24079 AACATAAGGCAAGCGAAATCGGTATGGAGGCCCTCGTCTCTCGAAATTAGCTCGTTACTG 24020 Query 36209 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 36268 || || | ||||||||| || || || || || ||||| ||||| || || || | |||| Sbjct 24019 AAAGTCAATCCGGGCATCAGACCGCGTTTCTTGAGCCAGAATATCGAAGCGAACGCTCCA 23960 Query 36269 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTG 36328 |||||||| ||||| || ||||| || || | | | ||||| || ||| | Sbjct 23959 CTGAAGAAAATCCCTTCGACCGCCGCGAACGCCACGACACGTTCTCCGTAGGTAGCATTC 23900 Query 36329 TCAT---GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 36385 | || ||||| || | |||||||| || ||||| || | || ||||| ||||| Sbjct 23899 TGATTCCCGATCCAATTCAGGGCCCAATCAGCTTTCTTCTTGATGCATGGCATGGTCTCG 23840 Query 36386 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 36445 || || | || |||| | ||| | ||| | | || |||| | || | | Sbjct 23839 ATGGCCCTGAATAGATGATCACGTTCCATCGGATCCGTGATGTAGGTATTGAGCAGCA-A 23781 Query 36446 CTA-TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGC 36504 | | |||||||||||||||||||| || || | ||| || |||||||| || | ||| Sbjct 23780 CGAGTACATTTCCGAATGAATGTTCTCCATCATGACTTGGAAGCCGTAGAAGCAGCGAGC 23721 Query 36505 CTCGGTAATCTGTACTTCT 36523 || || | ||| || ||| Sbjct 23720 TTCCGTGACCTGAACCTCT 23702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658154609749240