Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq614 163 3e-35 seq2156 132 5e-26 >seq614 Length=536467 Score = 163 bits (180), Expect = 3e-35 Identities = 582/902 (65%), Gaps = 17/902 (2%) Strand=Plus/Plus Query 153626 GTTGACGGCAATCGACGCCAAGTTGCAAACGGCAGTTTCGTCGGGGGCGCAATATTGTAC 153685 ||||| ||| | ||| ||||||||||| || || | ||||| || | | || | || Sbjct 530747 GTTGAGGGCCACCGAAGCCAAGTTGCAGACCGCGATCTCGTCTGGCGACGAGTACTCGAC 530806 Query 153686 TATTTCCGCACACAAATTGCTGCATTTTATCAGGCCGCAATTACTTTGATTGCTTTTGCG 153745 ||||| | || | ||| ||| || || ||| ||| ||| ||||| ||||| Sbjct 530807 GATTTCTGTGCAAAGATTCGAGCACTTGATGGTCCCGAGATTCTGTTGGTTGCTCTTGCG 530866 Query 153746 GTTACAAGCGTCCTTGTATAGCATGTATGGTGTGCCGGTTTCGGCTTGAATTTCTATAAT 153805 ||| |||||||||||||| |||||||| || || ||||||||| ||| |||| | || Sbjct 530867 GTTGCAAGCGTCCTTGTACAGCATGTACGGGGTCCCGGTTTCGATCTGACTTTCCAGGAT 530926 Query 153806 AGTACGCATCAATGTGACCGCGGGCATTTGATCGC-GAAACTGGCCCTTGTCTTCGTAGT 153864 ||| | || | | ||| || || | | ||| |||| | | || ||| Sbjct 530927 CGTATACCACAGTTTCTGGGCGTCGATCTGGCGGATGTAAC-GGCCTTCCTTCTCATAGC 530985 Query 153865 GTTTGTACCAGTAT-TCAAACTCATCACCAAACGTATTGTTAAGCTCGGGACATTCGTTG 153923 | ||| ||| | || ||||| || || |||| | | || | || || ||| Sbjct 530986 CCTCGTAG-AGTTTCTCGAACTCGTCGCCCCACGTGTCACTGAGGCCCGGGCACGTATTG 531044 Query 153924 GGACACATCAGTGACCATCGGCCATTTTCTTGAACGCGACGCATAAATATATCGGGAACC 153983 |||||||| || ||||| ||| |||| || |||||| ||| || | || |||| | Sbjct 531045 GGACACATGAGCGACCACTTGCCGTTTTGTTCAACGCGTTTCATGAACAGGTCCGGAATC 531104 Query 153984 CATAGGGCGTTCATCAGGTCGCGCGCTTTCGTGTCTTCGCTGCCAATGTTTCGACGCATG 154043 || ||||||| | |||||||| || | | |||||| ||||| ||||| ||| | Sbjct 531105 CACAGGGCGTAGAAGAGGTCGCGGGCACGCATCTCTTCGATGCCAGTGTTTTTACGGAGA 531164 Query 154044 TGTAAGACGTCCATTATGTCGCAATGCCACGGTTCCACGTAAACTGCTTGAGCGCCTTTA 154103 | |||| || | || |||| |||||||| || | || | || |||||| Sbjct 531165 TCCAAGAACTCGAAAATATCGCCGTGCCACGGCTCGAGATAGATGGCGAAAGCGCCGGGT 531224 Query 154104 CG---CTTGCCGCCCTGATTTACGTGACGCACCATATTGTTGAAAACCCGAAGCATGGGT 154160 || ||||||||||| | |||| || | | ||||||||||| || |||||||| Sbjct 531225 CGTTTGTTGCCGCCCTGGTCGACGTAGCGAGCGGTGTTGTTGAAAACTCGCAGCATGGGA 531284 Query 154161 AGCAGACCGCTGGCGGTACCGTTTGT-----AGATTTAATCTTGCTGTTGCGGCCTCGAA 154215 | | |||| | | || ||||| || ||| ||| | || | ||||| Sbjct 531285 ACGATACCGTTCGACGTCCCGTTCGTCCCGGCGATGTAA-GAGCCCGTAG----GTCGAA 531339 Query 154216 CGCTGTTTACGTTTAATCCAATACCGCCGCCGTGTTTGGAGATCATGGCGCAATCGTTCA 154275 || | | ||||| |||||||| ||| || ||| ||||||| ||||| | | ||| Sbjct 531340 TGCAATGGATGTTTACACCAATACCACCGGCGGATTTCGAGATCAGAGCGCATTGGCTCA 531399 Query 154276 ATGTGTTATAGATACCACGAATGCTATCGCTTTCCATGGTCAATAGGAAACATGAACTCA 154335 || | ||||| || || ||| | ||| |||| |||||||| || |||| Sbjct 531400 GCGTTTCGTAGATCCCTTCGATAGAATCATCCTTCATTGTCAGCAGGAAACAGGAGCTCA 531459 Query 154336 TCTGCGGAGTTGGAGTGCCGGCAGCAAACATGGTCGGGCTTGCGTGCGTGTACATCTTTG 154395 ||| || ||| || || |||| ||||| || ||||| ||| || || Sbjct 531460 ACTGTGGGCGGCAAGTACCCGCGTTGAACAGCGTCGGACTGGCGTGGGTGAACCATTTCT 531519 Query 154396 TGCTCAAAAATTTATAAGACTTTATGGCATTATCAATGTCGTCTCCAAAGATACCTAGAG 154455 ||||| || || || | || ||||| || | |||||| || || || | | Sbjct 531520 CGCTCATGAAGTTGTAGGTCTCGATGGCGGCCTCCACGTCGTCACCGTGAATTCCGACCG 531579 Query 154456 CTATACGCATGTGCATGTGTTGAATCCTTTCGGCAACTTTTTCGTTAATTTTTATCAGGT 154515 | ||||| ||||||| ||| || ||| | | ||| ||| ||||||| |||| Sbjct 531580 AAACGCGCATCAGCATGTGCTGAGGTCTCTCGACGATTTTACCGTCGATTTTTAGGAGGT 531639 Query 154516 AG 154517 || Sbjct 531640 AG 531641 >seq2156 Length=2198910 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| ||||| | ||| | ||| ||||| | || ||||| ||||| || || || ||| Sbjct 1777316 GCCTCCTCGGAGACGGAGAACCAAGTGCAAGGTCGACTCCTTTTGGATATTGTAGTCGGA 1777257 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| ||||||||||||||||||||| | |||||||| ||||| || || || Sbjct 1777256 CAGCGTGCGACCGTCTTCGAGCTGTTTACCAGCGAAAATCAGACGCTGCTGGTCCGGTGG 1777197 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||| ||||| ||| ||| || | | ||| | ||||| | |||||| || Sbjct 1777196 GATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTTTCGATCGTGTCAGAGGGCTCGAC 1777137 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | ||||||||| || | || || ||||| || ||||| Sbjct 1777136 CTCCAGAGTGATCGTCTTGCCCGTTAGGGTCTTGACGAAAATCTGCAT 1777089 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | || | || | ||| | ||| ||||| ||||| ||||| || || Sbjct 1775618 CCTCCTCGGAGGCGGAGGACGAGGTGGAGCGTCGACTCCTTTTGGATGTTGTAGTCCGAA 1775559 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | |||||| |||||||| ||||| ||||||||||||||||||| ||||| Sbjct 1775558 AGGGTTCGGCCGTCTTCAAGCTGTTTTCCAGCGAAGATCAGACGTTGCTGATCCGGAGGG 1775499 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || |||||||| |||||| || | | || | ||||||| | |||| || Sbjct 1775498 ATTCCCTCTTTGTCCTGGATTTTAGCCTTCACATTCTCAATGGTGTCGGCGAGCTCGACA 1775439 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | || |||||||| | ||||| ||||| |||||||| Sbjct 1775438 TCGAGCGTGATGGTTTTGCCGGTGAGAGTTTTGACGAAGATTTGCAT 1775392 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| | ||| | || ||||||||||| ||||| ||||||||| Sbjct 1778166 CCACCACGCAGACGAAGAACCAGGTGGAGGGTGGACTCTTTTTGGATGTTGTAATCGCTC 1778107 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||||| || |||||||| || ||||| | || ||||| ||||| || || || Sbjct 1778106 AATGTGCGACCATCCTCGAGCTGCTTGCCAGCGAAAATAAGACGCTGCTGGTCTGGGGGA 1778047 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || || ||||| ||| ||| |||| | || | ||||| | ||||| || Sbjct 1778046 ATCCCCTCCTTGTCCTGGATCTTTGCCTTTACGTTCTCGATGGTGTCCGACGGCTCGACT 1777987 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | ||||| ||||| | || || || || || ||||| Sbjct 1777986 TCCAGGGTGATGGTCTTCCCGGTGAGGGTCTTCACAAAGATCTGCAT 1777940 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/230 (70%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 || ||||| || | ||| | ||| | || | |||||| ||||| || ||||| ||||| Sbjct 1778396 TGACCGCCGCGAAGACGAAGAACGAGATGGAGCGTAGATTCTTTCTGGATGTTGTAATCC 1778337 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 || || | ||||||||| ||||| ||||| | || ||||||||||| ||||| Sbjct 1778336 GACAAGGTACGGCCGTCTTCGAGTTGTTTGCCAGCGAAAATAAGACGTTGCTGGTCGGG- 1778278 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714 || || ||||| ||||| |||||| || | | || | ||||| | || || Sbjct 1778277 GGGATTCCTTCCTTGTCTTGGATTTTGGCCTTGACATTCTCGATGGTGTCAGAGGCTTCT 1778218 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || | || | || || || ||||| ||||| ||||| || ||||| Sbjct 1778217 ACTTCGAGAGTGATGGTTTTTCCCGTCAAGGTTTTGACGAAAATCTGCAT 1778168 Score = 86.0 bits (94), Expect = 6e-12 Identities = 114/156 (73%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||||||||| || || || |||| ||||||||||||||||| || ||||| || ||| Sbjct 1777471 TCTTCGAGCTGCTTCCCGGCGAAGATGAGACGTTGCTGATCGGGCGGAATGCCCTCCTTG 1777412 Query 139670 TCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||| | |||| || | | || | |||||| | || || ||||| | || | Sbjct 1777411 TC-TTGAATCTTTGCCTTGACGTTCTCGATTGTGTCCGACGGTTCAACCTCGAGCGTGAT 1777353 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| || || | || || ||||| |||||||| Sbjct 1777352 GGTCTTACCCGTGAGGGTCTTGACGAAAATTTGCAT 1777317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496050290031200